Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0324
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0573 - 4580054-4580416                                           29   2.2  
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    27   8.8  

>11_01_0573 - 4580054-4580416
          Length = 120

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -2

Query: 505 DSYFPQPFTGASGSKVPRLLSSYRSDYCA*LYTAKNTACFSRLISFCSLLLMQFC 341
           D + P PF G      P LL     D     Y  ++   FSRL+S    LL   C
Sbjct: 38  DMFIPSPFGGEMVDVDPDLLQDMSRDVEDPTYNERDFMKFSRLVSDSETLLYDGC 92


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 220 LFTGNT-KEMR-RNREFRSQIFCRLFNLVIYSLKLERDCELAYRTALIKVNKMRLNGKNK 393
           LF G   K MR R  E  ++     F L  Y   LER+ E++ R    K+NK  + G+NK
Sbjct: 155 LFMGKRLKNMRVRLTEIAAERTHYGFTLDTYPRDLERE-EISKRETTSKINKSAVVGRNK 213

Query: 394 Q 396
           +
Sbjct: 214 E 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,600,792
Number of Sequences: 37544
Number of extensions: 275973
Number of successful extensions: 677
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)