Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0324
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             30   1.3  
SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_8776| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)                    28   5.1  
SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)                   27   9.0  

>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 130 HYLRNCNKDAIRLKL-ISRFLLYCDHRYNH 216
           HY RN NK     +   S+FL + DH+YNH
Sbjct: 124 HYYRNSNKSRNDGRAGCSKFLNHTDHKYNH 153


>SB_30941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 330

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 130 HYLRNCNKDAIRLKL-ISRFLLYCDHRYNH 216
           HY RN NK     +   S+FL + DH+YNH
Sbjct: 124 HYYRNSNKSRNDGRAGCSKFLNHTDHKYNH 153


>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = -3

Query: 489 NPSPAHRGQKCPGCCRVTEAIIAHNCILQK 400
           NPS  H G KC G  R+ E      C L K
Sbjct: 534 NPSAKHGGSKCTGLSRINEDCNLAPCYLSK 563


>SB_10520| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1280

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 489 NPSPAHRGQKCPGCCRVTEAIIAHNC 412
           NP+PA+ G  CPG    T +   H C
Sbjct: 168 NPAPAYGGADCPGPANKTRSCNEHPC 193


>SB_8776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/39 (38%), Positives = 26/39 (66%)
 Frame = -1

Query: 464 KSAPVVVELPKRLLRITVYCKKYCLFFPFNLILFTFINA 348
           KSA   VE+P++ L+ TV  +++ L F  +L+L T++ A
Sbjct: 91  KSAKQFVEIPQKYLKNTV--EQFVLHFVASLVLTTYLTA 127


>SB_5816| Best HMM Match : RVT_1 (HMM E-Value=3e-16)
          Length = 904

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/66 (28%), Positives = 29/66 (43%)
 Frame = -3

Query: 576 LYYSNYKLHRYVIYINSRNHYHI*ILIFRNPSPAHRGQKCPGCCRVTEAIIAHNCILQKI 397
           L YS++K HR V  + S N   +  ++ R  S            +   +++AH C L   
Sbjct: 120 LAYSSFKKHRLVRAVTSMNFNQLVTVVTRPISKTCLDHIFTNYPQRISSVVAHTCGLSDH 179

Query: 396 LLVFPV 379
           L VF V
Sbjct: 180 LPVFAV 185


>SB_12085| Best HMM Match : TBP (HMM E-Value=3.5e-35)
          Length = 440

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 489 NPSPAHRGQKCPGCCRVTEAIIAHNC 412
           NPSP   G+ C G    T+A   H C
Sbjct: 117 NPSPLFGGKDCAGAMEETKACNTHPC 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,781,935
Number of Sequences: 59808
Number of extensions: 341370
Number of successful extensions: 921
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)