Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0324
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.3  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   4.1  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.4  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 247 RRNREFRSQIFCRLFNLVIYSLKLERDCELAYRTALIKVNKMRLN--GKN 390
           RR    R++ +C LF+L +       D     R  +  V   RLN  GKN
Sbjct: 530 RRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKN 579


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +1

Query: 247 RRNREFRSQIFCRLFNLVIYSLKLERDCELAYRTALIKVNKMRLN--GKN 390
           RR    R++ +C LF+L +       D     R  +  V   RLN  GKN
Sbjct: 498 RRVASVRAETYCNLFSLSVDHFNAVLDQYPLMRRTMESVAAERLNKIGKN 547


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 462 FDPDAPVKGCGK*ESRCGNGFLNLYI*H 545
           FDPD P++   + +S   NG +  +I H
Sbjct: 779 FDPDVPIELQIQKQSHTPNGIVKTWIAH 806


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 25  TSGSPGCRKLLFYLKLVLRNRTTPMEH*RRPRYRGHYLRNCNKDAIR 165
           +S S G R   F       +R     H  R  YR    R+C++D  R
Sbjct: 213 SSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 409 TAKNTACFSRLISFC 365
           T K TACF   + +C
Sbjct: 166 TGKTTACFEPSLDYC 180


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 509  SRFLFSATLHRRIGVKSAPVVV 444
            SRF F A LH  +  ++A +++
Sbjct: 1141 SRFEFRAALHEALRGRTAQLII 1162


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 567 SNYKLHRYVIYINSRNHYH 511
           +NYK   Y  Y N+ N+Y+
Sbjct: 320 NNYKYSNYNNYNNNYNNYN 338


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,364
Number of Sequences: 438
Number of extensions: 3484
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)