Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0324
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53440.1 68414.m06057 leucine-rich repeat family protein / pr...    30   1.0  
At1g26250.1 68414.m03202 proline-rich extensin, putative similar...    28   4.2  
At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR...    28   5.6  

>At1g53440.1 68414.m06057 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1035

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
 Frame = +1

Query: 169 KLISRFLLY---CDHRYNHHLFTGNTKEMRRNREFRSQIFCRLFNLVIYSLKLERDCELA 339
           +L S+ L Y   C  R ++ +     + M  N +  S +  RLF++ +  + LERD  +A
Sbjct: 480 RLASQSLKYYGLCMRRGSYKVQLYFAEIMFSNDQTYSSLGRRLFDIYVQGILLERDFNIA 539

Query: 340 YRTA------LIKVNKMRLNGKNKQYFLQYTVMRNNRFGNSTTTGALLT 468
            R        L +V+++++NG   +  L++T    N        G L++
Sbjct: 540 QRAGGVGKPFLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLIS 588


>At1g26250.1 68414.m03202 proline-rich extensin, putative similar to
           extensin gi|1165322|gb|AAB53156; contains proline-rich
           extensin domains, INTERPRO:IPR002965
          Length = 443

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -2

Query: 541 YIYKFKKPLPHLDSYFPQP 485
           Y+YK   P P++DSY P P
Sbjct: 335 YVYKSPPPPPYVDSYSPPP 353


>At2g17060.1 68415.m01970 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1195

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
 Frame = +1

Query: 232 NTKEMRRNREFRSQIF---CRLFNLVIYSLKLERDCELAYRTALIKVNKMRLNGKNKQYF 402
           +  EM  N    S+ F   C L  L +Y+ +  RDC++  +       K  +      Y+
Sbjct: 584 DVSEMDNNMTLDSKFFSEMCNLRYLKVYNSQCSRDCDVGCKLTFPDGLKCSMENVRYLYW 643

Query: 403 LQYTVMRNNRFGN 441
           LQ+ + + ++  N
Sbjct: 644 LQFPLKKLSKAFN 656


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,502
Number of Sequences: 28952
Number of extensions: 226207
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)