Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0323
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)                36   0.025
SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)           34   0.10 
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)                33   0.18 
SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)               31   0.55 
SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)          28   5.1  
SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)           28   6.7  
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_38764| Best HMM Match : CBM_14 (HMM E-Value=1.5e-10)
          Length = 155

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = +3

Query: 213 IASNMKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 374
           ++S+MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 46  MSSDMKSLVLLIACFSVARATEDDFCKER-DAGC--YVDLKDCSKYY-QCDDFH 95


>SB_19839| Best HMM Match : Ery_res_leader2 (HMM E-Value=9.9)
          Length = 117

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = +2

Query: 233 VCSHRCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLR 355
           V SH  LSG GC G+GR +  E++ R      +A LQ +LR
Sbjct: 56  VWSHLHLSGGGC-GKGRHLPKEKQSRGSPPISAALLQHILR 95


>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
          Length = 339

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +3

Query: 225 MKVYALIVACLALGVLAEEDSCYQNVDQGCRRTLSLPHCSAYYGQFKDNH 374
           MK   L++AC ++    E+D C +  D GC   + L  CS YY Q  D H
Sbjct: 1   MKSLVLLIACFSVARATEDDYCKER-DAGC--YVDLKDCSKYY-QCDDFH 46


>SB_58496| Best HMM Match : Ferritin (HMM E-Value=0.0012)
          Length = 126

 Score = 31.5 bits (68), Expect = 0.55
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 426 YHYLLSASYFNNYQTNRQGFAKLFXKLSDDSWE 524
           Y YL  A +F+    N  GF K F K S + WE
Sbjct: 50  YTYLSMAFHFDRDDINLPGFNKFFKKASKEEWE 82


>SB_31735| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 162 RKYCLYTHWRRRRLPTMTRLDENVRTQDNRL*FIL 58
           R+     H  RR +P+ TRLD  +RTQ   L  +L
Sbjct: 329 RRVLRSAHDARRNIPSATRLDGRLRTQHTELYCVL 363


>SB_12078| Best HMM Match : Ubie_methyltran (HMM E-Value=0.17)
          Length = 237

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 510 DDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGD 605
           +DS ++ +G +K V K GG+  F  H   K D
Sbjct: 160 EDSLDQLLGEVKRVLKPGGRFYFIEHIADKSD 191


>SB_10903| Best HMM Match : Aldolase_II (HMM E-Value=9.1e-17)
          Length = 280

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 224 YEGVCSHRCLSGSGCAGRGRLML 292
           +EGVC+H  +   G  G GR+ML
Sbjct: 63  HEGVCNHLSMMAPGKHGTGRVML 85


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/36 (30%), Positives = 23/36 (63%)
 Frame = +2

Query: 149 RQYFRHTSNALVIFSRIRH*INRIKYEGVCSHRCLS 256
           R + RH ++   +F R+ H  NR++Y+G  ++ C++
Sbjct: 367 RSHVRHEAS---LFGRMNHYENRVEYKGFTANICIA 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,040,085
Number of Sequences: 59808
Number of extensions: 388300
Number of successful extensions: 905
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)