Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0320
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)               57   9e-09
SB_14528| Best HMM Match : CXCXC (HMM E-Value=8.1)                     29   3.6  

>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 31/76 (40%), Positives = 45/76 (59%)
 Frame = +3

Query: 66  LQEKFDEAAANVKNLKALPTDAQLLNLYAHFKQATVGDADPANRPGLLDLKGKAKFDAWH 245
           +Q+ F +A   V++LK L  D Q L  Y  FKQAT G     +RPG  D+ GKAK+++WH
Sbjct: 13  VQDLFAQATDYVRSLKNL-RDEQKLLFYGLFKQATEGPCK-TSRPGFWDIVGKAKWESWH 70

Query: 246 KLAGTSKEDAQKAYIE 293
           +     +E A K Y++
Sbjct: 71  QHGKMPQEKAMKIYVQ 86


>SB_14528| Best HMM Match : CXCXC (HMM E-Value=8.1)
          Length = 310

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 12/65 (18%)
 Frame = -1

Query: 223 LPFK----SRRPGLLAGSASPT-VACLKWA-------YKLRSWASVGRAFRFFTLAAASS 80
           LP+K     RR  LL     P  + C++W        Y L SW +   A RF+ ++  ++
Sbjct: 69  LPYKLGSHERRQSLLPPRTPPVAITCMRWVATNAASRYYLMSWVATNAASRFYLISWVAT 128

Query: 79  NFSWR 65
           N + R
Sbjct: 129 NAASR 133


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,990
Number of Sequences: 59808
Number of extensions: 312921
Number of successful extensions: 650
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)