Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0316
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   5.0  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   5.0  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   8.8  

>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 235 PADRRSDLGLSVCLGLSVCHCYCNFGS 155
           P DR + +  ++C+G  +C   C FG+
Sbjct: 43  PTDRIAFISETLCIGCGICVKKCPFGA 69


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 125 WLLNICAIINGTTVIWSIALESA 57
           +L N   + NGT+V W++A E +
Sbjct: 498 YLPNAIVLANGTSVFWAVATEDS 520


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 543 YIDIVNVLSIITNLRTSY 490
           YI+I+NVLS++T+    Y
Sbjct: 105 YIEIINVLSVLTSCLEEY 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,382
Number of Sequences: 5004
Number of extensions: 33215
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)