Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0316
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)                   28   7.0  
SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)                     27   9.2  

>SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)
          Length = 235

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -2

Query: 575 KLKFSVLGGPFT*TLLMCCR 516
           ++KFS+LGG  T  +L CCR
Sbjct: 71  RMKFSLLGGNATNRVLKCCR 90


>SB_31846| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 454

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 17  VVAVTSIGRSCAAPQTPALYSRL 85
           +V VTS G  CA P  P +Y++L
Sbjct: 417 LVGVTSWGYGCAHPDYPGIYAKL 439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,721
Number of Sequences: 59808
Number of extensions: 274693
Number of successful extensions: 790
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)