Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0316
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01040.1 68417.m00141 glycosyl hydrolase family 18 protein co...    28   4.3  
At5g17100.1 68418.m02003 hypothetical protein                          28   5.7  
At4g19180.1 68417.m02830 nucleoside phosphatase family protein /...    28   5.7  

>At4g01040.1 68417.m00141 glycosyl hydrolase family 18 protein
           contains Pfam profile PF00704: Glycosyl hydrolases
           family 18
          Length = 430

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +1

Query: 511 DNRQHINNVYVKGPPRTE 564
           +N+QH+  +YV GPPR+E
Sbjct: 247 NNQQHMQFMYVVGPPRSE 264


>At5g17100.1 68418.m02003 hypothetical protein
          Length = 239

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +3

Query: 24  PSPRSGGPAPLRRLQRYTPDYSSTVYNRTNIQQPV 128
           PSP+ G    +  L+ + PDY++ +YN  +++ P+
Sbjct: 205 PSPKPGTEIYIN-LKGFIPDYANGIYNFGSLEAPI 238


>At4g19180.1 68417.m02830 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|O18956
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Bos taurus}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 740

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 306 WSNNRRSESILQSKRQQSKQ 365
           WS+ RRS+  LQS+R QS++
Sbjct: 707 WSSPRRSQMRLQSRRSQSRE 726


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,090,356
Number of Sequences: 28952
Number of extensions: 183354
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)