Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0315
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    30   0.24 
SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr 1|||...    28   0.96 
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   6.8  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +3

Query: 459 YIQTILGFLTLQV*L*KCLHYKTLSF*FYEVMNNS*IYKQLRRVKVSPNKNRN 617
           +I  +LG + + + L  CLH+      FY ++N   I  Q R V + PNK  N
Sbjct: 384 FIGVLLGLIGV-IGLFICLHFSGAMNGFYRLLNRHGIPVQERIVNIGPNKPEN 435


>SPAP14E8.03 |bos1||SNARE Bos1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 235

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +1

Query: 247 LSLSKSPIDNYGCQSDRQLTSATSR-IYLRVEKWKTKHLQ 363
           LSLS+S ID+Y     R+L  A  +   +R+++++ KH+Q
Sbjct: 48  LSLSRS-IDDYDSMVQRELVPAKKKKATIRIQEFRQKHVQ 86


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 254 CQSHPLTITAVRVTDSSRQQQVEFISGSKNGKQNICKKHFHTNSCVL 394
           C  HP T+  +      R  ++  ++ SK  + + C+ HF+  SC L
Sbjct: 218 CAFHP-TLPLILSAGDDRLVKLWRMTASKAWEVDTCRGHFNNVSCCL 263


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,650
Number of Sequences: 5004
Number of extensions: 40164
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)