Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0315
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)                     32   0.44 
SB_49283| Best HMM Match : NapE (HMM E-Value=1.7)                      29   4.1  
SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   5.4  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.1  

>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 800

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = -1

Query: 251 ESCAQKKCRTNGTRICFYLMNFNYT 177
           ESC + +C+ NGT  C YL N NYT
Sbjct: 155 ESCQEDQCKNNGT--CQYLGNGNYT 177


>SB_49283| Best HMM Match : NapE (HMM E-Value=1.7)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -3

Query: 552 LPRKIKSLMFYNVNIFKATPVELRNQE 472
           LP  + +L+F  + ++  +P+ELRN++
Sbjct: 102 LPIAVAALIFPTIRVYMCSPIELRNED 128


>SB_22835| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 594

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 209 YVCRLFDISFAHNFHCQSHPLTI 277
           Y C L D +F+H+ HC  H  T+
Sbjct: 378 YKCALCDKAFSHSSHCNRHMETV 400


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -2

Query: 67 TSSLPRAEFLQPGDPLV 17
          ++ + R EFLQPGDPLV
Sbjct: 26 STRVDRIEFLQPGDPLV 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,103,102
Number of Sequences: 59808
Number of extensions: 283518
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)