Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0315
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U23519-4|AAK31501.1|  358|Caenorhabditis elegans Toxin-regulated...    27   8.3  

>U64833-1|AAB04814.1|  857|Caenorhabditis elegans Hypothetical
           protein B0507.6 protein.
          Length = 857

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/65 (24%), Positives = 25/65 (38%)
 Frame = +2

Query: 170 HYVCN*NSLNKNKYVCRLFDISFAHNFHCQSHPLTITAVRVTDSSRQQQVEFISGSKNGK 349
           H +CN       K+  +    +F  NF    HP+ IT    T   +  +  +  G  N  
Sbjct: 286 HEICNDVQSYPGKHYDKNTSSNFVFNFEIDEHPVPITP---TSPKQNYEKTYKDGDSNQT 342

Query: 350 QNICK 364
             IC+
Sbjct: 343 GGICE 347


>U23519-4|AAK31501.1|  358|Caenorhabditis elegans Toxin-regulated
           target of p38mapkprotein 2 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +2

Query: 188 NSLNKNKYVCRLFDISFAHNFHCQSHPLTITAVRVTDSSRQ 310
           N L K +Y  ++  I  AHNF   S+ + IT V +  SSR+
Sbjct: 292 NGLFKTEYSLKV-TIGRAHNFVLASYEVPITIVTMDQSSRR 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,279,106
Number of Sequences: 27780
Number of extensions: 224849
Number of successful extensions: 545
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)