Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0315
         (626 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29460.1 68414.m03604 auxin-responsive protein, putative simi...    30   1.4  
At1g74170.1 68414.m08590 leucine-rich repeat family protein cont...    29   1.9  
At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related...    29   3.3  
At1g34650.1 68414.m04309 homeobox-leucine zipper family protein ...    28   4.4  

>At1g29460.1 68414.m03604 auxin-responsive protein, putative similar
           to auxin-induced protein 6B (SP:P33083) [Glycine max]
          Length = 148

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 297 TAHVSNKSNLSQGRKMENKTFAKNTFIRIRVYFPLDYDFSQLFEELLSL 443
           T   +  +  S    +E   F   T  +IR  FPL Y  + +FEELL +
Sbjct: 32  TTTTTTTTTTSSSTAVEKGCFVVYTVDKIRFAFPLSYLNNSVFEELLKI 80


>At1g74170.1 68414.m08590 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 1068

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -3

Query: 567 FMSYSLPRKIKSLMFYNVNIFKATPVELRNQEWFV 463
           F S+ LP+   +L+F NV++ K   + L+N  W +
Sbjct: 485 FTSFQLPKSAHNLLFLNVSVNKFNHLFLQNFGWIL 519


>At4g14150.1 68417.m02183 phragmoplast-associated kinesin-related
           protein (PAKRP1)
          Length = 1292

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 268 IDNYGCQSDRQLTSAT-SRIYLRVEKWKTKHLQKTLSYEFVCTSL 399
           ++ + C   R LT     R++ R+++ + KH ++ L+Y+  C+ L
Sbjct: 183 LEEHLCGDQRGLTPRVFERLFARIKEEQVKHAERQLNYQCRCSLL 227


>At1g34650.1 68414.m04309 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
            homeobox 1 (GP:12002853) {Picea abies}; contains Pfam
           PF00046: Homeobox domain and Pfam PF01852: START domain
          Length = 708

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 218 RLFDISFAHNFHCQSHPLTITAVRVTDSSRQQQVEFISGSKNGKQNI 358
           R  ++    + HCQ +P+T  A  VT   ++  V F+  S  G+  +
Sbjct: 552 RNLEVRHQWDVHCQGNPVTEAARFVTGPDQKNNVTFLQPSSVGEYKL 598


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,136,589
Number of Sequences: 28952
Number of extensions: 188642
Number of successful extensions: 380
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)