Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0314
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.43 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    25   0.43 
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    25   0.43 
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    25   0.43 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.3  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   4.0  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   5.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    21   7.0  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   7.0  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 195 NTY*KYNYSFNNFSLGCQK 139
           N Y KYNY+ NN++  C+K
Sbjct: 94  NNY-KYNYNNNNYNNNCKK 111


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 195 NTY*KYNYSFNNFSLGCQK 139
           N Y KYNY+ NN++  C+K
Sbjct: 94  NNY-KYNYNNNNYNNNCKK 111


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 195 NTY*KYNYSFNNFSLGCQK 139
           N Y KYNY+ NN++  C+K
Sbjct: 94  NNY-KYNYNNNNYNNNCKK 111


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 195 NTY*KYNYSFNNFSLGCQK 139
           N Y KYNY+ NN++  C+K
Sbjct: 94  NNY-KYNYNNNNYNNNCKK 111


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 124 PECAFFLTPQRKIIETIIVFLI-CVYLL 204
           P CA  LTP   ++ + I F + C+ +L
Sbjct: 182 PTCALDLTPTYAVVSSSISFYVPCIVML 209


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +1

Query: 403 APPSKIVTALFRIHLYLLNGPLLAFLFPETASRKIF 510
           A P K+    +RI   +L      +L P T  + ++
Sbjct: 2   ASPQKLANKFYRISPQILKNDKRIYLSPRTPIKNVY 37


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 172 IIVFLICVYLLVKTYPILKIPIDT 243
           +I+F ICV +   T+  LK  I T
Sbjct: 5   VIIFAICVCVGAMTHEELKTGIQT 28


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 490 TASRKIFVEAALYWIQHGMMCIIPYYLLRLGGVYNI 597
           T++     + AL  I    M   PY ++   G++N+
Sbjct: 270 TSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNL 305


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 195 NTY*KYNYSFNNFS 154
           N Y  YNY+ NN++
Sbjct: 99  NNYNNYNYNNNNYN 112


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 9/36 (25%), Positives = 17/36 (47%)
 Frame = +1

Query: 490 TASRKIFVEAALYWIQHGMMCIIPYYLLRLGGVYNI 597
           T++     + AL  I    M   PY ++   G++N+
Sbjct: 20  TSAECKLAKVALMTISLWFMAWTPYLVINFSGIFNL 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,414
Number of Sequences: 438
Number of extensions: 4163
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)