Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0313
         (310 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E80B8D Cluster: PREDICTED: similar to Gp5-prov p...    31   5.0  
UniRef50_UPI00006CD1F2 Cluster: hypothetical protein TTHERM_0013...    31   5.0  
UniRef50_A0YJV3 Cluster: Chemotaxis protein CheA; n=1; Lyngbya s...    30   8.8  

>UniRef50_UPI0000E80B8D Cluster: PREDICTED: similar to Gp5-prov
           protein; n=1; Gallus gallus|Rep: PREDICTED: similar to
           Gp5-prov protein - Gallus gallus
          Length = 495

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +1

Query: 160 YIHNSQHGHDQRKHLIMSNNHVK-IQPKSYQGLRRQK 267
           Y+ +   G  + +HLI+S+N++  + P +++GLRR K
Sbjct: 64  YVQDVFSGMGELQHLILSSNNIALVSPAAFKGLRRLK 100


>UniRef50_UPI00006CD1F2 Cluster: hypothetical protein
           TTHERM_00130010; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00130010 - Tetrahymena
           thermophila SB210
          Length = 716

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = +1

Query: 106 RLKKFFIIHK*NIQNLH*YIHNSQHGHDQRKHLIMSNNHVK 228
           R KKF++  K N + ++  I+N++ G++Q+  ++ + NH K
Sbjct: 73  RKKKFYLAKKLNQEVINDMINNNEQGNNQQLQVVNNANHQK 113


>UniRef50_A0YJV3 Cluster: Chemotaxis protein CheA; n=1; Lyngbya sp.
           PCC 8106|Rep: Chemotaxis protein CheA - Lyngbya sp. PCC
           8106
          Length = 810

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 193 RKHLIMSNNHVKIQPKSYQGLRRQKL*ILTV 285
           RKHL  +   VKI+ KS+Q  R QK  IL V
Sbjct: 667 RKHLSSNRKFVKIEGKSHQEYREQKSVILLV 697


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,895,876
Number of Sequences: 1657284
Number of extensions: 2552840
Number of successful extensions: 4428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4413
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)