Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0313
         (310 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    25   0.14 
AY600516-1|AAT11864.1|  143|Tribolium castaneum optomotor-blind-...    23   0.55 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    19   9.0  

>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 25.4 bits (53), Expect = 0.14
 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 139 NIQNLH*Y-IHNSQHGHDQRKHLIMSNNHVKIQPKSYQ 249
           NI + H + I NS H +  R HL+ +N+ +K+   +++
Sbjct: 82  NISDKHGFTILNSMHKYQPRFHLVRANDILKLPYSTFR 119


>AY600516-1|AAT11864.1|  143|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 143

 Score = 23.4 bits (48), Expect = 0.55
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 163 IHNSQHGHDQRKHLIMSNNHVKIQPKSYQ 249
           I NS H +  R HL+ +N+ +K+   +++
Sbjct: 100 ILNSMHKYQPRFHLVRANDILKLPYSTFR 128


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 105 SFKKILHYT*IEHSKLTLVHSQQSAW 182
           +FKKI+ Y   ++ K+T    +  AW
Sbjct: 512 AFKKIVTYKGGKYRKVTFQCLKSIAW 537


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,841
Number of Sequences: 336
Number of extensions: 750
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5624413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)