Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0313
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   1.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    24   4.5  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    24   4.5  
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ...    24   5.9  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 175 QHGHDQRKHLIMSNNHVKIQPKSYQ 249
           Q+G+D  K  ++  NH  +QP S +
Sbjct: 82  QYGNDPSKKTVLIYNHFDVQPASLE 106


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 206 LCQIIM*KSNRSLIRDLGGKNY 271
           LC  I+  S+ S IRDL  KNY
Sbjct: 114 LCASIIPSSDVSFIRDLISKNY 135


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 175 DCCECTSVSFECS 137
           D CECT   +EC+
Sbjct: 619 DACECTDEDYECN 631


>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 392

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = +1

Query: 169 NSQHGHDQRKHLIMSNNHVKI 231
           N+ +GH+ +KH ++  ++V +
Sbjct: 4   NNVYGHEMKKHFMLDPDYVNV 24


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 875,009
Number of Sequences: 5004
Number of extensions: 12032
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)