Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0312
(497 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0224 + 1789447-1789633,1789959-1790261,1793380-1793542,179... 30 1.2
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 29 1.6
11_01_0353 - 2648496-2649224 29 2.1
02_01_0384 - 2781362-2782299,2782320-2782428 29 2.1
12_01_0053 - 438527-438670,439038-439247,439401-439530,439672-43... 29 2.7
09_04_0752 + 19933604-19934278,19934679-19935387,19936118-199361... 28 3.6
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373... 28 4.8
01_06_0373 - 28841462-28842850 28 4.8
01_01_1152 + 9170628-9171899 28 4.8
11_01_0052 - 396822-396965,397332-397541,397686-397815,397956-39... 27 6.3
08_01_0123 + 974941-975186,975274-977505 27 6.3
08_01_0227 + 1827461-1827674,1827844-1828143,1828272-1828434,182... 27 8.4
>08_01_0224 +
1789447-1789633,1789959-1790261,1793380-1793542,
1793561-1793597,1794305-1794925
Length = 436
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 393 IRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 259
+RH ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 130 VRHREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 174
>08_01_0906 +
8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/42 (28%), Positives = 28/42 (66%)
Frame = +1
Query: 310 DDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENF 435
+++++ A+K+ ++ ++KG+E+ A K++ G LDE+F
Sbjct: 594 NEESVANYCATKNNNVWNVKGLEVTGAIKLFDQRWGNLDEDF 635
>11_01_0353 - 2648496-2649224
Length = 242
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 135 HIREICDGCHCXXXXX*TNK*LSSCLWPASLESSCRIPAA 16
H+ + GC C L+S +WP+S+ S+C+ AA
Sbjct: 25 HVPVVDSGCGCRPRRPRLLS-LASFIWPSSMSSACKQAAA 63
>02_01_0384 - 2781362-2782299,2782320-2782428
Length = 348
Score = 29.1 bits (62), Expect = 2.1
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = -1
Query: 380 SSTPLIDRRSRLLLANSVRIASSSGKPIAFKSSSWVSPSEAKAN*ARGGSTENAER 213
S++P R+RL S +SG P +SSS SPS A RGG ++ R
Sbjct: 211 SASPASPSRTRLAPPRSPPAGGASGAPR--RSSSAASPSCAGVEGPRGGEVDDGRR 264
>12_01_0053 -
438527-438670,439038-439247,439401-439530,439672-439842,
440233-440355,440439-440543,440656-441332,441498-441604,
441970-442177,442178-442245,444209-444411,444580-444663,
444780-445109,445238-445438,445667-445744,446236-446306
Length = 969
Score = 28.7 bits (61), Expect = 2.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 328 TEFASKSRDLRSIKGVELKMANKVYVHDG 414
T+ S S+D++ ++ VE + N VHDG
Sbjct: 520 TQIPSASKDIKEVRAVEEFLPNDFVVHDG 548
>09_04_0752 +
19933604-19934278,19934679-19935387,19936118-19936161,
19936607-19936704,19937056-19937160,19937694-19937757,
19938316-19938885
Length = 754
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Frame = -1
Query: 368 LIDRRSRLLLANSVRIASSSGK 303
LIDRR RLL NS A++SGK
Sbjct: 643 LIDRRRRLLEVNSAVAAAASGK 664
>01_06_0823 +
32234588-32234936,32236354-32237093,32237260-32237343,
32237909-32239263,32240399-32240460,32240544-32241144,
32241229-32241310,32241778-32241840
Length = 1111
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 329 QNSRVKAVIFDQLKALSLKWRIKYTFMMVEN*TRILQSFPGTSSIRTSKTLISRRI 496
+N + K +FD+LKA LK +T + EN +L F + +K I R++
Sbjct: 679 KNKKDKDEVFDELKAAGLKRPCSFTDISSEN--ALLLEFETATDAAAAKAHIRRQL 732
>01_06_0373 - 28841462-28842850
Length = 462
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +1
Query: 211 VLSAFSVLPPLAQLALASDGETHEELLKAIGFPDDDAIRTEFASKSRD 354
+L+ F LP L A+ GE EEL+ A G P A + RD
Sbjct: 125 ILAFFLYLPVLHAQTTANFGEMGEELVHAPGIPSFPATHSVLPLMERD 172
>01_01_1152 + 9170628-9171899
Length = 423
Score = 27.9 bits (59), Expect = 4.8
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
Frame = +1
Query: 199 GKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPD-DDAIRTEFASKSRDLRSIKGV 375
G++ ++S S LA +A + GET ELL +G P + R+ LR +
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSPSLAELHRSPTTRLVARLRHLPNT 117
Query: 376 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFS 489
A V+V G L FA + + + + DF+
Sbjct: 118 --SFACGVWVDRGRALTPEFADAAASRYAAVAEPADFA 153
>11_01_0052 -
396822-396965,397332-397541,397686-397815,397956-398126,
398723-398827,398940-399613,399659-399688,399756-399932
Length = 546
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +1
Query: 328 TEFASKSRDLRSIKGVELKMANKVYVHDG 414
T+ S S+D++ ++ V+ + N VHDG
Sbjct: 139 TQIPSASKDIKEVRAVDEFLPNDFVVHDG 167
>08_01_0123 + 974941-975186,975274-977505
Length = 825
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 175 TEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKAIGFPDD 315
T ++ +P +L L +A A A+DG H L +G PDD
Sbjct: 617 TNILNYSPCSVAILVDRGSLSTVAAAAAAADGFPHRVALYFLGGPDD 663
>08_01_0227 +
1827461-1827674,1827844-1828143,1828272-1828434,
1828453-1828489,1829207-1829737,1830677-1830829
Length = 465
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = -3
Query: 411 IMNVYFIRHFKLNAFN*SKITAFTREFCSYSIVVREADSFQKLFMGFTIRS 259
++N+ +R ++ +N + + FC+Y+I + D KL G I+S
Sbjct: 134 VLNI--VRRREITEYNPKQFCSIPTRFCAYNIAFFDLDKESKLARGPPIKS 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,385,728
Number of Sequences: 37544
Number of extensions: 269453
Number of successful extensions: 935
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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