Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0311
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907... 31 0.40
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 31 0.40
04_01_0609 + 7966263-7966366,7967945-7968706,7972607-7972851,797... 28 3.8
10_08_0026 - 14253680-14253894,14253981-14254109,14254704-142547... 27 5.0
07_03_1693 - 28756331-28756435,28756558-28756664,28757114-287572... 27 5.0
03_06_0300 + 32967935-32968029,32968975-32969077,32969175-329692... 27 5.0
01_07_0333 - 42813789-42814073,42814229-42814315,42815083-428151... 27 5.0
06_03_0610 - 22715637-22716797 27 6.6
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 27 6.6
11_01_0375 - 2855714-2855914,2856009-2856161,2856644-2856775,285... 27 8.7
10_01_0054 - 773395-774518,776957-777124,777455-778376 27 8.7
09_03_0068 + 12047193-12047548,12048302-12048428 27 8.7
06_03_1496 - 30567968-30568210,30568345-30568513,30568635-305687... 27 8.7
>03_03_0274 -
16089322-16089365,16089604-16089616,16090367-16090714,
16090771-16090974,16091403-16091504,16091710-16091741,
16092668-16093655,16094461-16094711,16095786-16097795,
16097903-16097954
Length = 1347
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = -1
Query: 255 SLDKAQLDTCLAVYQ-VPFSSLRYPILQAHPYSHFSSSTNWQKMI 124
SL K+ CLAVY+ VP S + +Q+ +SH + T W +++
Sbjct: 491 SLMKSVTSKCLAVYRWVPSSYPEFDYVQSMMFSHKNCRTIWNRLL 535
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 31.1 bits (67), Expect = 0.40
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Frame = +3
Query: 228 KCPTVPCP--VNEYFTNCAK---GMCRQEN--C---TELGK-LSECKTQSTELCEPGCVC 374
+CP V V + +TNC G C +N C T GK +S C + +E GC C
Sbjct: 515 ECPVVKGVKFVGDGYTNCEASGIGRCEIKNGGCWKETRNGKTISACSNEVSE----GCKC 570
Query: 375 EGGFLRSKNGTCVSIDEC 428
GF +C IDEC
Sbjct: 571 PPGFKGDGIKSCEDIDEC 588
>04_01_0609 +
7966263-7966366,7967945-7968706,7972607-7972851,
7976940-7977107,7977471-7977734,7977962-7978509
Length = 696
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 228 KCPTVPCPVNEYFTNCAKGMCRQENCTELGK-LSECKTQSTELCEPGCVCE 377
KC V ++ YF NC++G + K ++EC+ S +C G C+
Sbjct: 340 KCANVTSGLDGYFCNCSEGYIGNPYIPDGCKDVNECENNS--ICGAGSTCK 388
>10_08_0026 -
14253680-14253894,14253981-14254109,14254704-14254769,
14254887-14255133
Length = 218
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 137 QLVDEEKCEYGCACKIGYLRDENGTWYTARQVSNCALSSE 256
+ V EE Y CAC G++ N T + + NCA +
Sbjct: 116 ECVKEEGLSYHCACSPGFVNMFNLTMFPC--IKNCAFGKD 153
>07_03_1693 -
28756331-28756435,28756558-28756664,28757114-28757245,
28757412-28757478,28757553-28757635,28757824-28757905,
28763101-28763177,28763278-28763361,28763443-28763512,
28763625-28763713,28763801-28764487,28765700-28765997
Length = 626
Score = 27.5 bits (58), Expect = 5.0
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Frame = +3
Query: 252 VNEYFTNCAK---GMCRQEN--C---TELGK-LSECKTQSTELCEPGCVCEGGFLRSKNG 404
V + +T+C G C+ N C T+ GK +S C + ++ GC C GF
Sbjct: 454 VGDGYTHCEASGVGRCQINNGGCWKETKNGKTVSACSNEESK----GCKCPPGFKGDGIK 509
Query: 405 TCVSIDEC 428
+C IDEC
Sbjct: 510 SCEDIDEC 517
>03_06_0300 +
32967935-32968029,32968975-32969077,32969175-32969244,
32969464-32969581,32969687-32969744,32969831-32969895,
32969990-32969996,32970087-32970147,32970757-32970776,
32970858-32970923,32971126-32971293,32971372-32971629,
32972098-32972310,32972824-32973099
Length = 525
Score = 27.5 bits (58), Expect = 5.0
Identities = 21/81 (25%), Positives = 33/81 (40%)
Frame = -1
Query: 261 IHSLDKAQLDTCLAVYQVPFSSLRYPILQAHPYSHFSSSTNWQKMISFFSMHF*GLHKP* 82
+ +KA LD CL VY+ LR P+ ++ + +M+ F HF G H
Sbjct: 294 VEIFNKAILDRCLKVYRDKMDGLRLPVPVDRLQQVHETAIDQARML-FDKQHF-GKHHAA 351
Query: 81 RQVRSSFSGQVAVQRTMMLTN 19
+ + V R +L N
Sbjct: 352 QSILKLDDEIKKVYRNFLLAN 372
>01_07_0333 -
42813789-42814073,42814229-42814315,42815083-42815172,
42815555-42815623,42815859-42815888,42816060-42816164,
42816454-42816549,42816647-42816760,42816862-42816955,
42817027-42817190
Length = 377
Score = 27.5 bits (58), Expect = 5.0
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -2
Query: 383 APFTNAARLAQLCRLRFTFRQLAQLCAVLLTTHALSAVREV 261
APFT RL +L RLR + L ++CA + H L EV
Sbjct: 20 APFTLRHRL-RLRRLRASAATLREVCAGRVPEHVLQRAEEV 59
>06_03_0610 - 22715637-22716797
Length = 386
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 180 LQAHPYSHFSSSTNWQKMISFFSMHF 103
L PY+ F SST+W+K+ + F
Sbjct: 240 LDQSPYAEFMSSTHWEKLAEELTHQF 265
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/46 (30%), Positives = 16/46 (34%)
Frame = +3
Query: 231 CPTVPCPVNEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGC 368
CP + C +CAK CR C EC C GC
Sbjct: 676 CPKM-CKNRFRGCHCAKSQCRSRQCPCFAADRECDPDVCRNCWVGC 720
>11_01_0375 -
2855714-2855914,2856009-2856161,2856644-2856775,
2856875-2857071,2858506-2858590
Length = 255
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 400 FFDLKKPPSQTQPGSHSSVDCVLHSDNLPSSVQ 302
+F PP++T+ + +LH D+ PS+VQ
Sbjct: 216 YFFPPSPPTETRQEYFTRTLALLHKDDFPSAVQ 248
>10_01_0054 - 773395-774518,776957-777124,777455-778376
Length = 737
Score = 26.6 bits (56), Expect = 8.7
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = +3
Query: 324 SECKTQSTELCEPGCV--CEGGFLRSKNGTCVSIDECH 431
SE K T L GCV C L +KNG C + CH
Sbjct: 147 SEGKGLYTSLYYAGCVTYCSDS-LSAKNGKCAGVGCCH 183
>09_03_0068 + 12047193-12047548,12048302-12048428
Length = 160
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +2
Query: 17 AFVNIIVLCTATCPENEERTCL----QGLCRPQKCIEKNDIIFCQLVDEEKC 160
AF+ ++ C + C + E T + + R C+++ND++ E++C
Sbjct: 92 AFLCGLIFCFSVCAQQEGGTNMWVMGESNLRSIVCMQRNDVLIKDCFSEDRC 143
>06_03_1496 - 30567968-30568210,30568345-30568513,30568635-30568736,
30569087-30571855,30572402-30572430,30572546-30572659,
30572735-30572846,30574730-30574845,30574928-30575068,
30575121-30575243,30575346-30575478,30575842-30575972,
30576065-30576300,30577073-30577376
Length = 1573
Score = 26.6 bits (56), Expect = 8.7
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = +2
Query: 35 VLCTATCPENEERTCLQGLCRPQKCIEKN-DIIFCQLVD--EEKCEYGCACKIGYLRDEN 205
VL +TCP + C R C ++ DI ++ EE C YG K R
Sbjct: 1239 VLYCSTCPA-DRNFCSPEWVRDGLCFHQSTDITLSRIWQWYEEPCCYGLEVKAQDFRRSK 1297
Query: 206 GTWYTARQ 229
G W + Q
Sbjct: 1298 GLWNSPHQ 1305
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,602,342
Number of Sequences: 37544
Number of extensions: 275243
Number of successful extensions: 825
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -