Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0311
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    47   1e-07
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    47   1e-07
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   7.9  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 46.8 bits (106), Expect = 1e-07
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +3

Query: 246 CPVNEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGTCVSIDE 425
           CP NE F+ C  G C Q  C  +     C     ++C PGCVC  G+LR+K   CV   +
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNVVPKPLC----IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 426 C 428
           C
Sbjct: 91  C 91



 Score = 28.3 bits (60), Expect = 0.039
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 53  CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDE 202
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNK 81


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 46.8 bits (106), Expect = 1e-07
 Identities = 24/61 (39%), Positives = 31/61 (50%)
 Frame = +3

Query: 246 CPVNEYFTNCAKGMCRQENCTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGTCVSIDE 425
           CP NE F+ C  G C Q  C  +     C     ++C PGCVC  G+LR+K   CV   +
Sbjct: 37  CPSNEIFSRC-DGRC-QRFCPNVVPKPLC----IKICAPGCVCRLGYLRNKKKVCVPRSK 90

Query: 426 C 428
           C
Sbjct: 91  C 91



 Score = 28.3 bits (60), Expect = 0.039
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 53  CPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEYGCACKIGYLRDE 202
           CP NE  +   G C+ + C        C  +    C  GC C++GYLR++
Sbjct: 37  CPSNEIFSRCDGRCQ-RFCPNVVPKPLCIKI----CAPGCVCRLGYLRNK 81


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +1

Query: 124 YHLLPIS**GEVRIWMCLQNRISERRKWNLVYRKTSVQLCLVQ*MNTSRTALRACVVR 297
           Y+L+ I      +  +C + RI  RR W  V R++  Q+C     +  R +   C +R
Sbjct: 328 YNLMSIKYRNAFKQTICCKTRIIGRRSW--VTRES--QICNNSSSDKERNSSFKCSMR 381


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic
          acetylcholine receptor beta1subunit protein.
          Length = 520

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 35 VLCTATCPENEER 73
          V C   C E+EER
Sbjct: 17 VFCVGLCSEDEER 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,345
Number of Sequences: 438
Number of extensions: 2675
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)