Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0311
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   2.4  
At1g18090.2 68414.m02241 exonuclease, putative similar to Swiss-...    28   2.4  
At1g18090.1 68414.m02240 exonuclease, putative similar to Swiss-...    28   2.4  
At5g21140.1 68418.m02524 expressed protein                             28   3.2  
At5g27090.1 68418.m03232 MADS-box family protein contains Pfam p...    27   5.5  
At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase / c...    27   5.5  
At5g11410.1 68418.m01331 protein kinase family protein contains ...    27   7.3  
At5g59100.1 68418.m07404 subtilase family protein contains simil...    26   9.7  
At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR) domai...    26   9.7  
At4g32300.1 68417.m04596 lectin protein kinase family protein co...    26   9.7  
At3g61710.2 68416.m06916 autophagy protein Apg6 family contains ...    26   9.7  
At3g61710.1 68416.m06915 autophagy protein Apg6 family contains ...    26   9.7  
At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase, pu...    26   9.7  
At1g68140.1 68414.m07783 expressed protein                             26   9.7  
At1g32190.1 68414.m03959 expressed protein                             26   9.7  

>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +2

Query: 29  IIVLCTATCPENEERTCLQGLCRPQKCIEKNDIIFCQLVDEEKCEY 166
           I+V+C A     E    ++  C  +KC   +D++  +L D E+C Y
Sbjct: 159 IVVVCVAYSTSLEIVHAVRKSC-VRKCTNGDDLVLLELSDVEECMY 203


>At1g18090.2 68414.m02241 exonuclease, putative similar to
           Swiss-Prot:P53695 exonuclease I (EXO I)
           [Schizosaccharomyces pombe]
          Length = 577

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -2

Query: 116 FRCTSEVCINLEGRSALRFLDK*LYR 39
           + C+ E+C++ +G+  LR++D  ++R
Sbjct: 40  YSCSMELCLDTDGKKKLRYIDYFMHR 65


>At1g18090.1 68414.m02240 exonuclease, putative similar to
           Swiss-Prot:P53695 exonuclease I (EXO I)
           [Schizosaccharomyces pombe]
          Length = 577

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 8/26 (30%), Positives = 19/26 (73%)
 Frame = -2

Query: 116 FRCTSEVCINLEGRSALRFLDK*LYR 39
           + C+ E+C++ +G+  LR++D  ++R
Sbjct: 40  YSCSMELCLDTDGKKKLRYIDYFMHR 65


>At5g21140.1 68418.m02524 expressed protein
          Length = 312

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +3

Query: 162 NMDVPAK*DI*ETKMELGIPQDKCPTVPCPVNEYFTNCAKGMCRQ---ENCTELGK 320
           N DVP+     E   E G+  D CPT  CPV  +   C K +  Q   + C+  GK
Sbjct: 192 NNDVPSC----EVCNEAGVKADLCPTEGCPVRIH-KYCLKKLLSQRDDKRCSGCGK 242


>At5g27090.1 68418.m03232 MADS-box family protein contains Pfam
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain); MADS-box protein
           AGL54
          Length = 187

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 323 QLAQLCAVLLTTHALSAVREVFIHWTRHSWTLVLRYTK 210
           +L Q CAV  TT+ LS+   +  H  +  WT  L  T+
Sbjct: 150 ELGQSCAVYSTTYPLSSPSLIEDHQHQQQWTEPLSNTE 187


>At4g34870.1 68417.m04946 peptidyl-prolyl cis-trans isomerase /
           cyclophilin (CYP1) / rotamase identical to cyclophilin
           (CYP1) gi|992643|gb|AAA75512; similar to peptidyl-prolyl
           cis-trans isomerase, PPIase (cyclophilin, cyclosporin
           A-binding protein) [Catharanthus roseus]
           SWISS-PROT:Q39613
          Length = 172

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 279 KGMCRQEN-CTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGT 407
           + +C  E    +LGK    K        PG +C+GG   +KNGT
Sbjct: 37  RALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGT 80


>At5g11410.1 68418.m01331 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 336

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 363 GCVCEGGFLRSKNGTCVSIDECHRE 437
           GC+ E  F  S+ G  VS+ EC+++
Sbjct: 69  GCINETTFAPSRTGITVSVMECYQD 93


>At5g59100.1 68418.m07404 subtilase family protein contains
           similarity to prepro-cucumisin GI:807698 from [Cucumis
           melo]
          Length = 741

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 321 LSECKTQSTELCEPGCVCEGGFLRSKNGTCVS 416
           LS C      LCEP C+ +G  ++ K   C S
Sbjct: 371 LSTCSVDKARLCEPKCL-DGKLVKGKIVLCDS 401


>At5g45220.1 68418.m05550 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 546

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 26  NIIVLCTATCPENEERTCLQGLCRPQKCIEKNDII 130
           +IIVL   T    E + CL  L    KC EK+ ++
Sbjct: 65  SIIVLVIFTSRYTESKWCLMKLVDINKCAEKDHLV 99


>At4g32300.1 68417.m04596 lectin protein kinase family protein
           contains Pfam domains, PF01453: Lectin (probable mannose
           binding) and PF00069: Protein kinase domain
          Length = 821

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 321 LSECKTQSTELCEPGCVCEGGFLRSKNGTCVSID 422
           L  CK    E C   C C G F ++ +G C   D
Sbjct: 360 LDSCK----EFCHNNCSCLGLFFQNSSGNCFLFD 389


>At3g61710.2 68416.m06916 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 386

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 436 SLWHSSIDTHVPFFDLKKPPSQTQPGSHSSVDCVLHSDNLPSSVQFS*RHMP 281
           SL    +D++   F    PPS TQ  S    + VL S  + +S     RH P
Sbjct: 30  SLTIVGVDSYAGKFFNDPPPSATQGSSIHGANSVLGSTRMDNSFVVLPRHKP 81


>At3g61710.1 68416.m06915 autophagy protein Apg6 family contains
           weak similarity to Beclin 1 (Coiled-coil myosin-like
           BCL2-interacting protein) (Protein GT197)
           (Swiss-Prot:Q14457) [Homo sapiens]; contains Pfam
           profile PF04111: Autophagy protein Apg6
          Length = 517

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 436 SLWHSSIDTHVPFFDLKKPPSQTQPGSHSSVDCVLHSDNLPSSVQFS*RHMP 281
           SL    +D++   F    PPS TQ  S    + VL S  + +S     RH P
Sbjct: 30  SLTIVGVDSYAGKFFNDPPPSATQGSSIHGANSVLGSTRMDNSFVVLPRHKP 81


>At3g56070.1 68416.m06231 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase, PPIase
           (cyclophilin, cyclosporin A-binding protein)
           [Catharanthus roseus] SWISS-PROT:Q39613
          Length = 176

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +3

Query: 270 NCAKGMCRQEN-CTELGKLSECKTQSTELCEPGCVCEGGFLRSKNGT 407
           N  + +C  EN   + GK    K  +     PG +C+GG     NGT
Sbjct: 34  NNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGT 80


>At1g68140.1 68414.m07783 expressed protein
          Length = 334

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 237 TVPCPVNEYFTNCAKGMCRQENCTELGKLSECK 335
           T+  P  + F N  K +C QENC   G   E +
Sbjct: 131 TIVQPARD-FLNLKKRICMQENCVYAGTFKELR 162


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 21/69 (30%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
 Frame = +3

Query: 219 PQDKCPTVPCPVNEYFTNCAKGMCRQENC---TELGKLSECKTQS--TELCEPGCVCEGG 383
           P   CP   CP       C  G C    C   T  G  S CK  S  +  C P   C   
Sbjct: 303 PSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCSSC 362

Query: 384 FLRSKNGTC 410
           F + K   C
Sbjct: 363 FGKPKCPKC 371


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,127,726
Number of Sequences: 28952
Number of extensions: 223591
Number of successful extensions: 678
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)