Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0310
(554 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.) 91 6e-19
SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28) 70 1e-12
SB_3360| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.068
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.27
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 32 0.36
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89) 31 0.63
SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_20122| Best HMM Match : Arm (HMM E-Value=1.2e-24) 30 1.1
SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28) 30 1.5
SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14) 30 1.5
SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8) 30 1.5
SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.9
SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1) 29 3.4
SB_47670| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6) 29 3.4
SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011) 29 3.4
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 28 4.5
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_46871| Best HMM Match : PAN (HMM E-Value=1) 28 4.5
SB_46036| Best HMM Match : PSRT (HMM E-Value=1) 28 4.5
SB_27445| Best HMM Match : DUF227 (HMM E-Value=9.9) 28 4.5
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 28 4.5
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 28 5.9
SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08) 27 7.8
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.8
>SB_2550| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 929
Score = 91.1 bits (216), Expect = 6e-19
Identities = 51/120 (42%), Positives = 75/120 (62%), Gaps = 6/120 (5%)
Frame = +3
Query: 213 RMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 392
R+ +KN DV EMRRRR E V+LRK KREE + KRRNV ++ ++ + L T+D
Sbjct: 689 RIKAYKNKSLDVSEMRRRREEEGVQLRKAKREEQMFKRRNVEVTRTSSTGSELEELLTSD 748
Query: 393 ------LDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
L + ++ A +++ E QLAA Q+ RK+LS + NPPID++I G++P V+ L R
Sbjct: 749 YMAEGPLFQDMVQAIISDDVEMQLAATQRFRKILSKEPNPPIDDVIKCGVIPKFVEFLQR 808
>SB_52425| Best HMM Match : Arm (HMM E-Value=9.7e-28)
Length = 234
Score = 70.1 bits (164), Expect = 1e-12
Identities = 37/71 (52%), Positives = 48/71 (67%)
Frame = +3
Query: 300 KREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLS 479
KRE+ +QKRRNVP+ +E D+ DL+ +VM A + ++P QL AVQ RKLLS
Sbjct: 2 KREDCMQKRRNVPLELP---DEKDEKFQRRDLNAIVMEAGS-DDPSVQLGAVQAARKLLS 57
Query: 480 CDKNPPIDELI 512
DKNPPID+LI
Sbjct: 58 KDKNPPIDDLI 68
>SB_3360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 34.3 bits (75), Expect = 0.068
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 210 NRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 365
NR ++K G V R RR +LRK +RE L +R I ++ +E E
Sbjct: 2 NRKDLYKQGGHSVQAQRSRRRGQEADLRKERRERLLSSKR---IRFAEEEAE 50
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 32.3 bits (70), Expect = 0.27
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = +3
Query: 249 DEMRRRRNEVTVEL-RKNKREETLQKRRNVPISYSTDEEEIDK---NLATTDLDELVMNA 416
+++RRRR E L RK K E K R I D E + K + T + E +
Sbjct: 3892 EKLRRRREEKEAALLRKQKEEAAKSKIRLDDIESKADVETLIKRQEGVQDTIIQEEITGT 3951
Query: 417 ANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGIL 527
A +E +A + + R+ + + +D+L+A+G L
Sbjct: 3952 ARSEG-QASNEEIGEYRRRMGDNFCSTVDDLVASGQL 3987
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 31.9 bits (69), Expect = 0.36
Identities = 21/88 (23%), Positives = 41/88 (46%)
Frame = +3
Query: 195 TDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDK 374
+DQ ++++VF ++ + V R+ N+ T R K + L N +++ T E I K
Sbjct: 155 SDQESDQLYVFADSKEKVQVSRQHENQATT--RMIKPQWGLTSFDNKTVAFKTLTESIGK 212
Query: 375 NLATTDLDELVMNAANAENPEAQLAAVQ 458
+ + LV + N E A+++
Sbjct: 213 EAEEIEKEVLVQKTVDHANGEVVNASLE 240
>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
Length = 1494
Score = 31.1 bits (67), Expect = 0.63
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 4/55 (7%)
Frame = -2
Query: 508 SSSIGGFLSHESSFLHCCTAANCASGF----SALAAFITSSSRSVVARFLSISSS 356
SSS+ FLS SS T+++ S F S+L+ F+TSS S+++ F+S SSS
Sbjct: 331 SSSLSDFLSLSSSLSDFLTSSSLPSDFLTSSSSLSDFLTSS--SLLSDFISSSSS 383
>SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 30.3 bits (65), Expect = 1.1
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Frame = +3
Query: 168 ETASTDKMATDQAKNRMHVFKNAGKDVD-----EMRRRRNEVTVELRKNKREETLQKRRN 332
+TAS + ++ GKDVD E+RR+R E + +REE + RR
Sbjct: 437 DTASVATEVPSMRSSDKETVRSDGKDVDDSGSLELRRQREEARRLEEQRRREEEERTRRE 496
Query: 333 VPISYSTDEEE 365
+ +EEE
Sbjct: 497 KEEAQRREEEE 507
>SB_20122| Best HMM Match : Arm (HMM E-Value=1.2e-24)
Length = 163
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +3
Query: 450 AVQQCRKLLSCDKNPPIDELI 512
+VQ RK+LS +K+PPID++I
Sbjct: 13 SVQSVRKMLSKEKSPPIDDVI 33
>SB_25234| Best HMM Match : SMC_hinge (HMM E-Value=3.7e-28)
Length = 552
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +3
Query: 186 KMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 365
K TD + R + K+ E++R+R+E+T N R+E ++ + + +T EE
Sbjct: 200 KERTDDLEQRRSSIEQNNKEYSELKRKRDELT-----NTRKELWRQEAAMEQTINTAREE 254
Query: 366 IDKN 377
+ K+
Sbjct: 255 LSKS 258
>SB_57766| Best HMM Match : MFS_1 (HMM E-Value=2.4e-14)
Length = 499
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -2
Query: 532 MGSIPAAMSSSIGGFLSHESSFLHCCTAANCASGFSALAAFITSSSRSVVARFLSIS 362
+GS+ A+S +G + + T CAS SA+ F+TS S+ +L+ S
Sbjct: 74 VGSLALALSIGLGPVFAKLINSFGARTVTICASVVSAVGLFVTSQVNSLPLMYLTYS 130
>SB_27138| Best HMM Match : Ebp2 (HMM E-Value=1.8)
Length = 841
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +3
Query: 354 DEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELI 512
++EE+ A L+E V+NAA N L+A++ C K + D P +++
Sbjct: 336 EDEELILQFAEYLLEERVLNAATVSN---HLSAIEYCLKYIHKDSAPVFPDVV 385
>SB_17370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1743
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 392 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 225
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 1488 IGGTSVSLDHRMIGRITRKFFVDFL-CFRNTAILRSSCKLQYLPIHVSGFSRCLFE 1542
>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 29.5 bits (63), Expect = 1.9
Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +3
Query: 201 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEI--DK 374
Q + ++ N D +E R+ + ++RK K+E+ +KR+ V +++ EEE+ K
Sbjct: 130 QKRKKVQSKTNNKSDNEEEDERQEK---KIRKQKQEK--RKRKTVKADFNSSEEEVSSQK 184
Query: 375 NLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDEL 509
A++ D+ MN A + + + S D+ + EL
Sbjct: 185 TKASSRKDQKKMNKQMANKGKGAKSKKKTIESNSSDDEEGQVAEL 229
>SB_22193| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1231
Score = 29.1 bits (62), Expect = 2.6
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = -1
Query: 230 LEHMHAVFRLISR--HFICARCLDTVRGNYTKKQRINIKLLSSKLIKHVLRHYTSDGGLT 57
LEH F + + + IC R LD R YT N+ L S+L+ + DG L
Sbjct: 566 LEHSDCAFMVDNEAIYDICRRNLDIERPTYT-----NLNRLISQLVSSITASLRFDGALN 620
Query: 56 SIFTKYST 33
T++ T
Sbjct: 621 VDLTEFQT 628
>SB_51370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +3
Query: 150 ITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRR 266
I+ + ET ST + A + NR+++ K A +D +RRR
Sbjct: 346 ISEHYTETVSTVQNAIKECINRLNIRKKANGFLDTLRRR 384
>SB_22495| Best HMM Match : DUF116 (HMM E-Value=8.1)
Length = 440
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 392 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 225
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 341 IGGTSVSLDHRMIGRITRKLFVDFL-CFRNTAILRSSCKLQYLPIHVSGFSRCLFE 395
>SB_47670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +3
Query: 222 VFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 365
V+K A + R+R+E T E++K + +KRR + S +EEE
Sbjct: 123 VYKLAVLSAGKKIRKRHEKTTEMQKQTKMVPRKKRRVLSSSEEEEEEE 170
>SB_38184| Best HMM Match : HisKA_2 (HMM E-Value=8.6)
Length = 528
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 392 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 225
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 394 IGGTSVSLDHRMIGRITRKLFVDFL-CFRNTAILRSSCKLQYLPIHVSGFSRCLFE 448
>SB_19444| Best HMM Match : zf-C3HC4 (HMM E-Value=0.011)
Length = 434
Score = 28.7 bits (61), Expect = 3.4
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 195 TDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKRE--ETLQKRRNVPISYSTDEEEI 368
T+Q V K D +E++ R +E+ +L KNK + ET ++ + I Y +++ +
Sbjct: 341 TEQIFQEKKVVKKLQVDEEEIKHRISELQNQLAKNKSKLSETQERCEKLEIRYDEEKQRL 400
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = +3
Query: 219 HVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLD 398
H A + +DE R+R+++ V ++ + EE L+ N ++ + E + + +
Sbjct: 238 HDKSQANRSIDEDRKRKSDELVSVKGDSEEEGLENVENTDVNGNEGPEAKKRKVIYQENS 297
Query: 399 ELVMN 413
L N
Sbjct: 298 GLAQN 302
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = +3
Query: 168 ETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY 347
E DK DQ ++ + + K++D + + E+ E + +E + + +
Sbjct: 136 EMDKEDKEEMDQEMDKEEMDQEMDKEMD--KEDKEEMDQEEMDKQDKEEMDQEMDKQDKE 193
Query: 348 STDEEEIDKNLATTDLDELVMNAANAENPE 437
D+EE+DK D+ M+ + EN E
Sbjct: 194 EMDQEEMDKQDKENKEDKEEMDKQDKENKE 223
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 28.3 bits (60), Expect = 4.5
Identities = 21/81 (25%), Positives = 38/81 (46%)
Frame = +3
Query: 228 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELV 407
+ A K +E R+R E +K K+EE L++++ + +E+E + L + +
Sbjct: 260 EEAEKKREEEERKRREEEEAAQKWKKEELLRQQQ---LEREKEEQERAERLQREREEAME 316
Query: 408 MNAANAENPEAQLAAVQQCRK 470
E EA+ AA + RK
Sbjct: 317 AEDLAEEAAEAEAAAAEAARK 337
>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 152 NYTKKQRINIKLLSSKLIKHVLRHYTSDGGLTSIFTKYSTTHK 24
NY ++ + ++ L+S+ + + H D LTS Y+ HK
Sbjct: 128 NYAREHKRDVTSLTSQTLHYAREHKRDDTSLTSQTLHYAREHK 170
>SB_46871| Best HMM Match : PAN (HMM E-Value=1)
Length = 525
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 276 VTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTD 392
V ++ R N QK+ N+P S D E ID++L D
Sbjct: 380 VRLDSRTNSSSSKRQKKTNLPKSGENDVEIIDRSLVRDD 418
>SB_46036| Best HMM Match : PSRT (HMM E-Value=1)
Length = 878
Score = 28.3 bits (60), Expect = 4.5
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +3
Query: 183 DKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVE-LRKNK--REETLQKRRNVPISYST 353
D + NR KN+ R RR E +V LR++K REE QKR + P S
Sbjct: 329 DNSVSPPRGNRGRREKNSASP-SRRRGRREETSVSPLRRSKDSREEETQKRVDAPRDPSP 387
Query: 354 DEEE 365
EEE
Sbjct: 388 MEEE 391
>SB_27445| Best HMM Match : DUF227 (HMM E-Value=9.9)
Length = 129
Score = 28.3 bits (60), Expect = 4.5
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -1
Query: 392 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 225
+GG+ V +D +IGRI FL CF + C P H C+ E
Sbjct: 5 IGGTSVSLDHRMIGRITRKLFVDFL-CFCNTAILRSSCKLQYLPIHVSVFSRCLFE 59
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +3
Query: 141 LCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREET-L 317
+C + +T + Q R + +N+G + + + E + R+ +RE+ L
Sbjct: 1295 ICQSLEHAGKTPPALSSISQQLDTRREIQENSGTNQPQTTDKPKETRSQKRRRRREKAKL 1354
Query: 318 QKRRNVP---ISYSTDEEEIDKNLATTDLDELVMNAA 419
P I + D +E + + T++DE + AA
Sbjct: 1355 YASLRTPSDDIVLANDSKEENGRVIVTEIDEAIAKAA 1391
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/86 (20%), Positives = 38/86 (44%)
Frame = +3
Query: 129 DSLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKRE 308
DSL + VI +T K ++ ++ K ++ ++ ++++ + +KN +E
Sbjct: 1861 DSLGMAVIEKSLQKTFHPKKKENEEEDDKKEK-KEENEEEEKKKKKKENEEEDDKKNNKE 1919
Query: 309 ETLQKRRNVPISYSTDEEEIDKNLAT 386
E + + +EEE DK T
Sbjct: 1920 ENEEDEKKEKKKKEENEEEDDKKKKT 1945
>SB_5618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 801
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 321 KRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPEAQLAAVQQCR 467
K N+P + +T +EE L T D E +N N+ + + L A+Q +
Sbjct: 19 KENNLPRTLATLQEETGITLNTVDSVESFVNEINSGHWDTVLTAIQSLK 67
>SB_24364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 648
Score = 27.9 bits (59), Expect = 5.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 228 KNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 329
K+ +D DE++R+R V +R+ +R+ QKRR
Sbjct: 205 KDEKEDEDELKRKR--TGVRIRRRRRQRRKQKRR 236
>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
Length = 961
Score = 27.5 bits (58), Expect = 7.8
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +3
Query: 201 QAKNRMHV--FKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDK 374
+AK+ +V K A +D+D M R E +L K REE Q + ++ T+ E+ +
Sbjct: 172 KAKDDQYVKDLKKAAEDIDLMIEREEEQVKQLTKAYREELTQ----IEKAFVTERSELIE 227
Query: 375 N 377
N
Sbjct: 228 N 228
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 27.5 bits (58), Expect = 7.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 240 KDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 404
KD DEMRR ++T +LR+ + L + + S + +K T +DEL
Sbjct: 1545 KDADEMRRNIIKLTTQLREADKAR-LNQGEIDDLKLSLSISQAEKQQLQTRIDEL 1598
>SB_11650| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 336
Score = 27.5 bits (58), Expect = 7.8
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 1/116 (0%)
Frame = +3
Query: 207 KNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLAT 386
K +++ N G+D R R + KNK + + I++S D+ D+
Sbjct: 86 KEHLNMATN-GRDRTGDRYHRTRSAINDSKNKIQPNNTSTNSTRITWSMDDPATDEVFRE 144
Query: 387 TDLDELVMNAANAENPEAQLA-AVQQCRKLLSCDKNPPIDELIAAGILPILVQCLS 551
D+DEL +A + L + C LL D+N I +A + P + C S
Sbjct: 145 LDVDELRWPEEDARDSSQDLKNKTKVCSPLL--DENLGILPGVAP-LSPSMAACNS 197
>SB_4072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1364
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/56 (28%), Positives = 22/56 (39%)
Frame = -1
Query: 392 VGGSEVLVDLLLIGRIANGHITPFLKCFLSFVFS*LDCDFIPSPAHFIDIFACILE 225
+GG+ V +D +IGR FL CF + C P H C+ E
Sbjct: 1230 IGGTSVSLDHRMIGRTTRKFFVDFL-CFRNTAILKSSCKLPYLPIHVSGFSRCLFE 1284
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,514,484
Number of Sequences: 59808
Number of extensions: 371293
Number of successful extensions: 1302
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1276
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1288581898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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