Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0310
(554 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMP... 81 5e-16
At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMP... 81 5e-16
At1g02690.2 68414.m00220 importin alpha-2 subunit, putative simi... 81 5e-16
At1g02690.1 68414.m00219 importin alpha-2 subunit, putative simi... 81 5e-16
At4g02150.1 68417.m00287 importin alpha-2 subunit identical to i... 80 9e-16
At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMP... 73 2e-13
At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMP... 73 2e-13
At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2) sim... 67 8e-12
At5g49310.1 68418.m06102 importin alpha-1 subunit, putative simi... 62 2e-10
At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family pr... 52 3e-07
At3g05720.1 68416.m00640 importin alpha-1 subunit, putative simi... 47 7e-06
At3g49570.1 68416.m05417 expressed protein 31 0.52
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain... 30 0.90
At3g31910.1 68416.m04037 hypothetical protein 30 1.2
At3g05760.1 68416.m00647 expressed protein 29 1.6
At5g38400.1 68418.m04642 hypothetical protein 29 2.1
At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative / phos... 29 2.8
At5g63640.1 68418.m07990 VHS domain-containing protein / GAT dom... 28 3.6
At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box p... 28 3.6
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 28 3.6
At3g20490.1 68416.m02595 expressed protein 28 3.6
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 28 3.6
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00... 28 3.6
At3g49580.1 68416.m05418 expressed protein 28 4.8
At2g48120.1 68415.m06024 pale cress protein (PAC) identical to P... 28 4.8
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 28 4.8
At5g24660.1 68418.m02914 expressed protein 27 6.4
At3g46600.2 68416.m05059 scarecrow transcription factor family p... 27 6.4
At3g46600.1 68416.m05058 scarecrow transcription factor family p... 27 6.4
At3g18290.1 68416.m02326 zinc finger protein-related weak alignm... 27 6.4
At2g13320.1 68415.m01468 expressed protein anf genefinder 27 6.4
At5g53800.1 68418.m06685 expressed protein 27 8.4
At5g12300.1 68418.m01446 C2 domain-containing protein contains P... 27 8.4
At4g25120.1 68417.m03614 UvrD/REP helicase family protein contai... 27 8.4
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 8.4
>At1g09270.2 68414.m01036 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 81.0 bits (191), Expect = 5e-16
Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
Frame = +3
Query: 201 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRN--------VPISYSTD 356
+A+ R ++K G D DE RRRR + VE+RKNKRE++L K+R +P+ D
Sbjct: 8 RAELRKKIYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLD 66
Query: 357 EEE----IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGI 524
+ ++K L + ++ +++P+AQL A Q RKLLS +++PPIDE+I AG+
Sbjct: 67 GPQTAAAVEKRLEGIPM---MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGV 123
Query: 525 LPILVQCLSR 554
+P V+ L R
Sbjct: 124 IPRFVEFLGR 133
>At1g09270.1 68414.m01035 importin alpha-1 subunit, putative (IMPA4)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 538
Score = 81.0 bits (191), Expect = 5e-16
Identities = 49/130 (37%), Positives = 77/130 (59%), Gaps = 12/130 (9%)
Frame = +3
Query: 201 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRN--------VPISYSTD 356
+A+ R ++K G D DE RRRR + VE+RKNKRE++L K+R +P+ D
Sbjct: 8 RAELRKKIYKT-GVDADEARRRREDNLVEIRKNKREDSLLKKRREGMMLQQQLPLGAGLD 66
Query: 357 EEE----IDKNLATTDLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGI 524
+ ++K L + ++ +++P+AQL A Q RKLLS +++PPIDE+I AG+
Sbjct: 67 GPQTAAAVEKRLEGIPM---MVQGVYSDDPQAQLEATTQFRKLLSIERSPPIDEVIKAGV 123
Query: 525 LPILVQCLSR 554
+P V+ L R
Sbjct: 124 IPRFVEFLGR 133
>At1g02690.2 68414.m00220 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 539
Score = 81.0 bits (191), Expect = 5e-16
Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 6/110 (5%)
Frame = +3
Query: 243 DVDEMRRRRNEVTVELRKNKREETLQKRRNV---PISYSTDEEEIDKNLAT-TDLDELVM 410
D DE RRRR + VE+RKNKREE LQK+R P S ++ +L T T L+ +
Sbjct: 21 DADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQPGQDFSSSLPTETRLENIQQ 80
Query: 411 NAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
A +E+ + QL A R+LLS ++NPPI+E++ +G++P +VQ LSR
Sbjct: 81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSR 130
>At1g02690.1 68414.m00219 importin alpha-2 subunit, putative similar
to importin alpha-2 subunit (Karyopherin alpha-2
subunit) (KAP alpha) SP:O04294 from [Arabidopsis
thaliana]
Length = 538
Score = 81.0 bits (191), Expect = 5e-16
Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 6/110 (5%)
Frame = +3
Query: 243 DVDEMRRRRNEVTVELRKNKREETLQKRRNV---PISYSTDEEEIDKNLAT-TDLDELVM 410
D DE RRRR + VE+RKNKREE LQK+R P S ++ +L T T L+ +
Sbjct: 21 DADEGRRRREDNMVEIRKNKREENLQKKRREGFNPSMASQPGQDFSSSLPTETRLENIQQ 80
Query: 411 NAAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
A +E+ + QL A R+LLS ++NPPI+E++ +G++P +VQ LSR
Sbjct: 81 MIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQFLSR 130
>At4g02150.1 68417.m00287 importin alpha-2 subunit identical to
importin alpha-2 subunit (Karyopherin alpha-2 subunit)
(KAP alpha) SP:O04294 from [Arabidopsis thaliana]
Length = 531
Score = 80.2 bits (189), Expect = 9e-16
Identities = 46/109 (42%), Positives = 68/109 (62%), Gaps = 5/109 (4%)
Frame = +3
Query: 243 DVDEMRRRRNEVTVELRKNKREETLQKRR---NVPISYSTDEEEIDKNLATTDLDELVMN 413
D +E RRRR + VE+RKNKREE LQK+R ++ +T + E D + A D L
Sbjct: 21 DAEEGRRRREDNLVEIRKNKREENLQKKRFTSSMAFGSATGQTEQDLSSANQLKDNLPAM 80
Query: 414 AAN--AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
A +E+ +QL A RKLLS ++NPPI+E++ +G++P +V+ LSR
Sbjct: 81 VAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSR 129
>At3g06720.2 68416.m00797 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Frame = +3
Query: 243 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY-----STDEEEIDKNLATTDLDELV 407
D +E RRRR + VE+RK+KREE+L K+R + S +DK L + L ++V
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDS--LKDMV 78
Query: 408 MNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
+ ++P QL + Q RKLLS +++PPI+E+I+AG++P V+ L +
Sbjct: 79 AGVWS-DDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKK 126
>At3g06720.1 68416.m00796 importin alpha-1 subunit, putative (IMPA1)
similar to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 532
Score = 72.5 bits (170), Expect = 2e-13
Identities = 42/109 (38%), Positives = 67/109 (61%), Gaps = 5/109 (4%)
Frame = +3
Query: 243 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISY-----STDEEEIDKNLATTDLDELV 407
D +E RRRR + VE+RK+KREE+L K+R + S +DK L + L ++V
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLMKKRREGMQALQGFPSASAASVDKKLDS--LKDMV 78
Query: 408 MNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
+ ++P QL + Q RKLLS +++PPI+E+I+AG++P V+ L +
Sbjct: 79 AGVWS-DDPALQLESTTQFRKLLSIERSPPIEEVISAGVVPRFVEFLKK 126
>At4g16143.1 68417.m02447 importin alpha-2, putative (IMPA-2)
similar to importin alpha 2 [Capsicum annuum]
GI:13752562; contains Pfam profiles PF01749: Importin
beta binding domain, PF00514:
Armadillo/beta-catenin-like repeat; non-consensus GG
donor splice site at exon 1 and 6; CT acceptor splice
site at exon 2
Length = 444
Score = 66.9 bits (156), Expect = 8e-12
Identities = 41/111 (36%), Positives = 65/111 (58%), Gaps = 7/111 (6%)
Frame = +3
Query: 243 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEID-----KNLATTDLDEL- 404
D +E RRRR + VE+RK+KREE+LQK+R + + + L L+ L
Sbjct: 21 DAEEGRRRREDNMVEIRKSKREESLQKKRREGLQANQLPQFAPLLFLLHQLLEKKLESLP 80
Query: 405 -VMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
++ +++ QL A Q RKLLS +++PPI+E+I AG++P V+ L+R
Sbjct: 81 AMVGGVWSDDRSLQLEATTQFRKLLSIERSPPIEEVIDAGVVPRFVEFLTR 131
>At5g49310.1 68418.m06102 importin alpha-1 subunit, putative similar
to importin alpha-1 subunit (Karyopherin alpha-1
subunit, KAP alpha) [Arabidopsis thaliana]
SWISS-PROT:Q96321
Length = 519
Score = 62.5 bits (145), Expect = 2e-10
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Frame = +3
Query: 243 DVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAAN 422
D +E RRRR + VE+RK+KR E L K+R V + D L + D E ++ AN
Sbjct: 21 DAEEGRRRREDFLVEIRKSKRNENLMKKRRVKVL------PPDYKLISNDPFESLLEIAN 74
Query: 423 ------AENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
+++P QL + R +LS D++PP D +I +G++P V+ L +
Sbjct: 75 MITGVFSDDPSLQLEYTTRFRVVLSFDRSPPTDNVIKSGVVPRFVEFLKK 124
>At5g03070.1 68418.m00255 armadillo/beta-catenin repeat family
protein contains Pfam profile: PF00514
armadillo/beta-catenin-like repeat
Length = 483
Score = 51.6 bits (118), Expect = 3e-07
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 17/138 (12%)
Frame = +3
Query: 189 MATD-QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTD-EE 362
MA D A NR K++ +V RRR+ VTV K +RE ++ +R + + D E+
Sbjct: 1 MADDGSASNRRDPIKSSVGNVAGQRRRKQAVTVA--KERRELLVRAKRLCRVGTNGDVED 58
Query: 363 EIDKNLATTDLDELVMNAANAENPEAQLAAVQ---------------QCRKLLSCDKNPP 497
+ +N D ++ ++ A +++ E +AVQ + R+LLS + PP
Sbjct: 59 ALVENEMMVDEEQPILEAQASKSVEELKSAVQYQGKGAMQKRVTALRELRRLLSKSEFPP 118
Query: 498 IDELIAAGILPILVQCLS 551
++ + AG +P+LVQCLS
Sbjct: 119 VEAALRAGAIPLLVQCLS 136
>At3g05720.1 68416.m00640 importin alpha-1 subunit, putative similar
to importin alpha subunit (Karyopherin alpha subunit)
(KAP alpha) SP:O22478 from [Lycopersicon esculentum]
Length = 528
Score = 47.2 bits (107), Expect = 7e-06
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Frame = +3
Query: 258 RRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENPE 437
RRRR + VE+RK KREE+L K+R + +S + +D+ L ++ ++ +
Sbjct: 24 RRRREDDMVEIRKAKREESLLKKRREALPHSPSADSLDQKL---------ISCIWSDERD 74
Query: 438 AQLAAVQQCRKLLSCDK-NPPIDELIAAGILPILVQCLS 551
+ A Q R LL + N ++E+I AG++P V+ L+
Sbjct: 75 LLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLT 113
>At3g49570.1 68416.m05417 expressed protein
Length = 97
Score = 31.1 bits (67), Expect = 0.52
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 234 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 404
A ++V+E+RRR E+ E+ + K+E RR V + EE + LA +++ L
Sbjct: 11 AAEEVEELRRRNGELEREMEEMKKEMVQLWRRTVVAEEA--EERLCSQLAELEVESL 65
>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein
Length = 564
Score = 30.3 bits (65), Expect = 0.90
Identities = 23/92 (25%), Positives = 40/92 (43%)
Frame = +3
Query: 132 SLFLCVITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREE 311
++ L +I T C+ + Q + + KN+G VD + R+ EVT + K +E
Sbjct: 454 NVLLNLIETMCMSPQNLSIADLGQTEQALTYLKNSGFKVDWLERKLEEVT----EKKIQE 509
Query: 312 TLQKRRNVPISYSTDEEEIDKNLATTDLDELV 407
+ K R + EE D +D + L+
Sbjct: 510 HIGKSRMQGLEEDLKEELKDLKQKCSDTEALL 541
>At3g31910.1 68416.m04037 hypothetical protein
Length = 399
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 240 KDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAA 419
K V + ++E + +K+ +E L+KR + + S EE++K+L ++ E +AA
Sbjct: 311 KKVTDFIEEKDEEISKKKKDTLKEDLEKRSVLDVQLSNRIEEVEKDL--KEMKESKPDAA 368
Query: 420 NAENPE 437
+ N E
Sbjct: 369 TSRNDE 374
>At3g05760.1 68416.m00647 expressed protein
Length = 202
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/48 (29%), Positives = 29/48 (60%)
Frame = +3
Query: 240 KDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLA 383
+D+DE R++ E EL++ +RE+ +K++ + +E E+D +A
Sbjct: 144 QDLDERIRKQQEEEEELKRQRREKKKEKKKGKVVE---EEPEMDPEVA 188
>At5g38400.1 68418.m04642 hypothetical protein
Length = 151
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 186 KMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEE 365
K A AK RM+V+K + K + +R+++ + + L + K+E+T + NV + EE+
Sbjct: 35 KHARMTAKARMNVYKESMKPLPP-KRKKSLMIISLMR-KKEDTQDDQNNVTVVEKEKEEK 92
>At1g75370.1 68414.m08754 SEC14 cytosolic factor, putative /
phosphatidylinositol transfer-like protein, putative
similar to phosphatidylinositol transfer-like protein
III (GI:14486705) [Lotus japonicus]; contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminu
Length = 612
Score = 28.7 bits (61), Expect = 2.8
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = +3
Query: 174 ASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYST 353
+S DK + K +G +V+EM + V ELR K + R ISY T
Sbjct: 370 SSCDKPSFSGIKASDTSTAESGSEVEEMASPK--VNRELRVPKLTPVCEDIRGTAISYPT 427
Query: 354 DEEEIDKNLATTDLD 398
D E D + +D
Sbjct: 428 DSSEYDSPMVDKVVD 442
>At5g63640.1 68418.m07990 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 447
Score = 28.3 bits (60), Expect = 3.6
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 390 DLDELVMNAANAENPEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSR 554
D+ + + ++NP QL AVQ L++ ++I G+LP LV+ + +
Sbjct: 38 DVIKAIKKRLGSKNPNTQLYAVQLLEMLMNNIGENIHKQVIDTGVLPTLVKIVKK 92
>At5g04640.1 68418.m00470 MADS-box family protein SLM3 MADS-box
protein, S.latifolia, EMBL:SLSLM3
Length = 322
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/77 (24%), Positives = 36/77 (46%)
Frame = +3
Query: 198 DQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKN 377
++ ++ M KD+ +++ +R+ +K T QK+ P S S + + +KN
Sbjct: 103 EELRDAMDSMSKMLKDLKDLQNQRDCEEDVKKKGVLHGTHQKQTFNPESCSVNFDGFNKN 162
Query: 378 LATTDLDELVMNAANAE 428
DLDE+ + AE
Sbjct: 163 TEEFDLDEIFDYVSTAE 179
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/89 (25%), Positives = 37/89 (41%)
Frame = +3
Query: 150 ITTYCVETASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 329
I Y ET D D+ + M A ++ E RR E K + E L++
Sbjct: 71 IIEYKSETEEDDDDDEDEDEEYMRAQLEAAEE--EERRVAQAQIEEEEKRRAEAQLEETE 128
Query: 330 NVPISYSTDEEEIDKNLATTDLDELVMNA 416
+ +EEE+ ++ A + DEL+ A
Sbjct: 129 KLLAKARLEEEEMRRSKAQLEEDELLAKA 157
>At3g20490.1 68416.m02595 expressed protein
Length = 458
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -2
Query: 448 ANCASGFSALAAFITSSSRSVVARFLSISSSS 353
A+ ASG S++A+ SSRS + RF + S S
Sbjct: 149 ASAASGISSVASLFQMSSRSPLRRFQLLDSDS 180
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 28.3 bits (60), Expect = 3.6
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = -1
Query: 509 ELINRRVFITREQFSALLHSSQLCFRVFCVGSVHHQLIKVGG---SEVLVDLLLIGRIAN 339
+L+ + FI +F LL + + VFC ++HH I G + +++I + N
Sbjct: 497 QLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIYLGSLYFSMVII--LFN 554
Query: 338 GHI-TPFLKCFLSFVFS*LDCDFIPSPAH 255
G P L L ++ D F PS A+
Sbjct: 555 GFTEVPMLVAKLPVLYKHRDLHFYPSWAY 583
>At1g01110.1 68414.m00014 expressed protein contains Prosite
PS00165: Serine/threonine dehydratases
pyridoxal-phosphate attachment site
Length = 364
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -2
Query: 535 RMGSIPAAMSSSIGGFLSHESSFLHCCTAAN 443
R S + S GG L +S++ CCT +N
Sbjct: 317 RSPSFKSVAGSHFGGMLEQQSNYSSCCTESN 347
>At3g49580.1 68416.m05418 expressed protein
Length = 94
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +3
Query: 234 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 404
A +++DE+RRR E++ E+ + K E +R V + EE++ LA +++ L
Sbjct: 11 AAEEMDELRRRNIELSREVAEMKTEMIKLWQRTVVAEEA--EEQLCSQLAELEVESL 65
>At2g48120.1 68415.m06024 pale cress protein (PAC) identical to PAC
[Arabidopsis thaliana] gi|1483213|emb|CAA65334
Length = 313
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 249 DEMRRRRNEVTVELRKNKREETLQKRRNV 335
DE + R+ E T ELR+ +REE ++ R +
Sbjct: 61 DEWQARQREKTKELRRMQREEEEEEERKI 89
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 201 QAKNRMHVFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNL 380
Q K R V + ++ E +RR E + KREE + KRR + EE+++ +
Sbjct: 538 QRKEREEVERKR-REEQERKRREEEARKREEERKREEEMAKRREQE-RQRKEREEVERKI 595
>At5g24660.1 68418.m02914 expressed protein
Length = 94
Score = 27.5 bits (58), Expect = 6.4
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +3
Query: 234 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDEL 404
A +VDE+RR+ E+ + + K+ E LQ R ++ EE + LA + + L
Sbjct: 11 AASEVDELRRKNGEMEKAVEEMKK-EMLQLWRRTQVAEEA-EERLCSQLAELEAESL 65
>At3g46600.2 68416.m05059 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 453
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +3
Query: 246 VDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 425
VDE+ + EV + +KN + E +K+ + S++ + K+ D+ L+M A A
Sbjct: 31 VDELAEKFEEVLLVCQKNDQGEATEKKTR-HVKGSSNRYKQQKSDQPVDMRNLLMQCAQA 89
Query: 426 ENPEAQLAAVQQCRKL 473
Q A ++ +++
Sbjct: 90 VASFDQRRAFEKLKEI 105
>At3g46600.1 68416.m05058 scarecrow transcription factor family
protein scarecrow-like 11 - Arabidopsis thaliana,
EMBL:AF036307
Length = 583
Score = 27.5 bits (58), Expect = 6.4
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +3
Query: 246 VDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANA 425
VDE+ + EV + +KN + E +K+ + S++ + K+ D+ L+M A A
Sbjct: 161 VDELAEKFEEVLLVCQKNDQGEATEKKTR-HVKGSSNRYKQQKSDQPVDMRNLLMQCAQA 219
Query: 426 ENPEAQLAAVQQCRKL 473
Q A ++ +++
Sbjct: 220 VASFDQRRAFEKLKEI 235
>At3g18290.1 68416.m02326 zinc finger protein-related weak alignment
to Pfam profiles: PF00097 Zinc finger, C3HC4 type (RING
finger) (2 copies)
Length = 1254
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 222 VFKNAGKDVDEMRRRRNEVTVELRKNKREETLQKRR 329
+FK KD+ R +NE+ E+RK ++ TL RR
Sbjct: 923 LFKPGWKDI--FRMNQNELEAEIRKVYQDSTLDPRR 956
>At2g13320.1 68415.m01468 expressed protein anf genefinder
Length = 129
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 180 TDKMATDQAKNRMHVF---KNAGKDVDEMRRRRNEVTVELRKNKRE 308
TD++A + + + K G++ +E RRRRN++ E R+ +R+
Sbjct: 85 TDRLAAEAGEEELRRLLENKRRGREEEE-RRRRNQIEEEERRRRRK 129
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 234 AGKDVDEMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDE 401
+G + ++ RRR+ RK+ R+ + +RR S S+ + E + +D +E
Sbjct: 68 SGSESEKEERRRSRKDRGKRKSDRKSSRSRRRRRDYSSSSSDSESESESEYSDSEE 123
>At5g12300.1 68418.m01446 C2 domain-containing protein contains Pfam
profile PF00168: C2 domain
Length = 374
Score = 27.1 bits (57), Expect = 8.4
Identities = 20/88 (22%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +3
Query: 171 TASTDKMATDQAKNRMHVFKNAGKDVDEMRRRRN-EVTVELRKNKREETLQKRRNVPISY 347
++ST +D+ KN + +++ E+ RRR+ E E +NK E ++ + Y
Sbjct: 247 SSSTTTSLSDE-KNTADSNEKENREITEVSRRRSKEGEEEEEENKMNEETTMQKQIAEMY 305
Query: 348 STDEEEIDKNLATTDLDELVMNAANAEN 431
++ ++LA L + N + E+
Sbjct: 306 MRSMQQFTESLAKMKLPMDLHNKPHEED 333
>At4g25120.1 68417.m03614 UvrD/REP helicase family protein contains
Pfam PF00580: UvrD/REP helicase
Length = 1122
Score = 27.1 bits (57), Expect = 8.4
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +3
Query: 150 ITTYCVETASTDKMATDQAKNRMHVFKN--AGKDVDEMRRRR--NEVTVEL 290
I+T+C T D + + N++H F N + ++ + R RR NE +V L
Sbjct: 769 ISTHCTTTEEEDAIKEKKGCNQLHSFINYISERETENFRSRRRDNENSVTL 819
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = -1
Query: 269 PSPAHFIDIFACILEHMHAVFRLISRHFICARCLDTVRGNYTKKQRINIKLLSSK 105
PSP F ++F C+ +++ +F ++ + +D V Q+ + + S+K
Sbjct: 69 PSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAK 123
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,195,735
Number of Sequences: 28952
Number of extensions: 247271
Number of successful extensions: 938
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1053014392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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