Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0309
         (597 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.1  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.0  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       22   3.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   7.9  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 38   LVPNSCSPGIH 6
            LVP +C+PG+H
Sbjct: 1229 LVPQNCAPGLH 1239


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 396 YPSQIPRRGPAPSLPWT 446
           YPS +P    +P+LP T
Sbjct: 323 YPSPVPGHSTSPNLPLT 339


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 444 TLSPSPARKTACKSPLH 494
           TLS SP R+ A  +P H
Sbjct: 178 TLSQSPNRRRASSNPCH 194


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 125 SSSVFPYTKQKTDTDY 172
           SSS F Y K  ++ DY
Sbjct: 150 SSSAFSYIKPSSERDY 165


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,944
Number of Sequences: 336
Number of extensions: 2990
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)