Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0309
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 29 0.52
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase... 28 0.90
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 28 1.2
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 2.1
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 27 2.7
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 2.7
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 27 2.7
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 27 2.7
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc... 25 6.3
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 8.4
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 8.4
SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1 |Schizosa... 25 8.4
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 25 8.4
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.1 bits (62), Expect = 0.52
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = +3
Query: 423 PAPSLPWTLSPSPARKTACKSPLHWRNGTPKSIASTTYSMGSSTLLDLGA 572
PAP+ P TL+P P+ TP+ A++ SS L D A
Sbjct: 1182 PAPAAPQTLNPPSVSTVQQSKPIESNTHTPEVKATSESPSASSNLEDRAA 1231
>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 28.3 bits (60), Expect = 0.90
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -3
Query: 562 SSRVDDPIEYVVDAIDFGVPFR-QCNGDL 479
SS+V D ++YV+D D GV + C G++
Sbjct: 245 SSKVKDLVQYVIDVTDGGVDYAFDCTGNV 273
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 167 DYVYSSCAQRNVVLVCKHCVSCVFMCPKHDGFFKAQDLNL 286
D VY +VC+ CVSC F P H FF ++ L L
Sbjct: 214 DVVYMDGGNLKSTIVCQ-CVSCPFQIPGH--FFISKSLAL 250
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 398 SESDTTSWPGAVAALDSLTVACEKDSMQVTITLAKRDPEINSIYDIFNG 544
S+ T GA+A L+ L V E + + L K++ I +++D+ G
Sbjct: 197 SQRQATKAAGAIAGLNVLRVVNEPTAAALAYGLDKKNDAIVAVFDLGGG 245
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/65 (30%), Positives = 36/65 (55%)
Frame = -3
Query: 229 GHTVLAH*NHISLGTRRINIISVSFLFCIRKNRTRDFVMRPFLRGSFFFSIAFVLARIAT 50
G++ LA ++S+ + ISV ++ C+ +RT + F+ G FF +A + +AT
Sbjct: 303 GYSSLAA-QYMSVPVYALGGISV-YVICLLSDRTN--IRGWFIIGMNFFGLAGFIILLAT 358
Query: 49 TRSAS 35
T SA+
Sbjct: 359 TNSAA 363
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 344 RSKQIPLTDLPGTTVAAVSESDTTSW 421
+SK IP++ L GT + ++S+ + W
Sbjct: 449 KSKFIPISGLKGTNLTSISQEKLSQW 474
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +3
Query: 399 PSQIPRRGPAPSLPWTLSPSPAR 467
PS IP R P P TLSP P R
Sbjct: 585 PSVIPPRVPTPVPGRTLSPKPTR 607
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 429 PSLPWTLSPSPARKTACKSPLHWRNGTPKSIASTTYSMGSS 551
P+LP L P P + TA S N S ST +S+ ++
Sbjct: 186 PALPSKLPPKPLKITANSSLGQETNSNSSSFQSTLFSLNTA 226
>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
Sen2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = +2
Query: 110 SHNKISSSVFPYT--KQKTDTDYVYSSCAQRNVVLVCKHCVSCVFMCPKHDGFFK 268
SH + + + P KQK + + C R + V K + C CP + F K
Sbjct: 288 SHAEFAILLIPCVGNKQKYNMQWHEVHCLNRVIAQVKKSLILCYVQCPSIEDFNK 342
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 8.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 595 VFSETARIAPKSSRVDDPIEYV 530
+++ET S+R+DD +EYV
Sbjct: 466 LYTETVEAEQMSNRIDDGLEYV 487
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 8.4
Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Frame = -2
Query: 407 LTRIPQLPSFPVNLLAGFAWNARSRAARL--LSINTSFFNLFLSL 279
L IP N +A + WN AARL LS F + F SL
Sbjct: 86 LVTIPFTGKETKNSIASYDWNLTGVAARLGYLSCGLFFVSYFFSL 130
>SPAC1006.05c |och1||alpha-1,6-mannosyltransferase Och1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 396
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/39 (28%), Positives = 14/39 (35%)
Frame = +3
Query: 396 YPSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTP 512
Y ++P P L W S P + K WR P
Sbjct: 132 YEFEVPYHADIPKLIWQTSKDPFDREVMKYTRFWRINHP 170
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 299 KMRCLLIISALLATARSKQIPL 364
K CL ++S L +RS QIP+
Sbjct: 387 KTICLTVVSRFLRKSRSSQIPM 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,159
Number of Sequences: 5004
Number of extensions: 49036
Number of successful extensions: 158
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -