Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0309
         (597 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0177 + 18770409-18770897                                         30   1.2  
11_01_0759 + 6369149-6369231,6369765-6371556                           29   2.1  
11_01_0419 + 3226224-3226756,3228010-3228169,3228256-3228435,322...    29   2.8  
07_03_0808 - 21668100-21669092                                         29   2.8  
02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    29   2.8  
06_03_1384 + 29786028-29786657,29788581-29788711,29788987-297890...    28   4.9  
04_04_0146 + 23106325-23108154                                         28   4.9  
09_04_0711 + 19666277-19666283,19666836-19666954,19667068-196672...    28   6.5  
06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915           28   6.5  
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702...    28   6.5  
09_02_0082 - 4060018-4061604                                           27   8.6  
07_03_1500 + 27001842-27002058,27002144-27002283,27002458-270025...    27   8.6  

>05_04_0177 + 18770409-18770897
          Length = 162

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = +3

Query: 435 LPWTLSPSPARKTACKSPLHWRNGTPKSIASTTYSMGSSTLLDL 566
           LPW   P P  +  C+ P H       ++AS+   + ++T+ +L
Sbjct: 60  LPWHSVPQPLGQPVCRPPSHRIESAAATVASSFRRIAAATIAEL 103


>11_01_0759 + 6369149-6369231,6369765-6371556
          Length = 624

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 377 GTTVAAVSESDTTSWPGAVAALDSLTVACEKDSMQV 484
           G T+  VS       PG     D +T+ CEK  M++
Sbjct: 423 GATITHVSSGKNCKSPGCTGTADGVTMLCEKHRMKM 458


>11_01_0419 +
           3226224-3226756,3228010-3228169,3228256-3228435,
           3228525-3228659,3229262-3229344,3229442-3229535,
           3229649-3229735
          Length = 423

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = +3

Query: 399 PSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTPKSIASTTYSMGSSTLLDLGAIR 578
           P +  RRG  PSL   L+P+          L WR G+    A+     G+ +LLD  A R
Sbjct: 112 PQRRRRRGSRPSLFMVLAPAVILLAVMA--LVWRRGSRSRRAAAGGGGGAGSLLDDDAAR 169

Query: 579 A 581
           A
Sbjct: 170 A 170


>07_03_0808 - 21668100-21669092
          Length = 330

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = +3

Query: 327 RCSRPRVPSKSXXXXXXXXXXXXYPSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNG 506
           R  RPR P ++             PS  PRR P P  P + SP P+      SP  + + 
Sbjct: 135 RARRPRRPRRARGHQHQPALRHLPPSTAPRRTPPP--PGSASPRPS------SPESFSSA 186

Query: 507 TPKSIASTTYSMGSSTL 557
           T     ST +S   S +
Sbjct: 187 TGARFRSTCFSTRYSAI 203


>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 408 IPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTP-KSIASTTYSMGSST 554
           +P   P+ SL   L PSP R  +  SPL    G P  S+A+ +    SST
Sbjct: 23  LPSPPPSSSLLPPLLPSPPRPPSPPSPLPGGRGVPHSSLAAASRHYASST 72


>06_03_1384 +
           29786028-29786657,29788581-29788711,29788987-29789028,
           29789383-29789441,29789774-29790070,29790180-29790289,
           29790966-29791070,29791201-29791263,29791766-29791933,
           29792111-29792248
          Length = 580

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +3

Query: 396 YPSQIPRRGPAPSLPWTLSPSPARKT 473
           +PS  P  G +P LP  +SPSPAR T
Sbjct: 73  WPSPYPSGGASP-LPAGVSPSPARST 97


>04_04_0146 + 23106325-23108154
          Length = 609

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = +3

Query: 399 PSQIPRRGPAPS-LPWTLSPSPARKTACKSPL 491
           P  +P + P PS  PW  +P P  + A   PL
Sbjct: 14  PPPVPAQAPPPSPRPWYAAPPPPPQAAAADPL 45


>09_04_0711 +
           19666277-19666283,19666836-19666954,19667068-19667277,
           19667362-19667510,19667588-19667759,19668323-19668415,
           19668522-19668661,19668752-19668851
          Length = 329

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 422 PGAVAALDSLTVACEKDSMQVTITLAKRDPEINSIYD 532
           PG  + L+SLT    K+ ++  ++  K DP +  I D
Sbjct: 114 PGMSSMLESLTSPSHKELLEERMSRIKEDPSLKGILD 150


>06_01_1002 + 7796367-7796651,7796727-7797489,7797800-7797915
          Length = 387

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 365 TDLPGTTVAAVSESDTTSWPGAVAALD 445
           TD  GTT AA+  S+T +W G  A++D
Sbjct: 162 TDAAGTTYAALYSSETEAWSGP-ASID 187


>01_06_1827 +
           40169001-40169263,40169358-40169472,40170090-40170201,
           40170556-40170623,40170798-40170852,40170948-40171027,
           40171811-40171924,40172178-40172296,40173064-40173181,
           40173264-40173394,40173535-40173688,40173922-40174017
          Length = 474

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 441 WTLSPSPARKTACKSPLHWRNGTPKSIASTTYSMGSSTLLDLGAIRAVSE 590
           +T S    R+  C++ L  R GTP++     Y  G+  + D+   RA+SE
Sbjct: 119 FTFSRGRLREWRCRAKLAIR-GTPENPLIGLYQEGTHAVADIPECRAISE 167


>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 417 RGPAPSLPWTLSPSPARKT--ACKSPLHWRNGTPKSIASTTYSMG 545
           R PAP +P  L+P+P   T  A   P+    G   S  +T YS G
Sbjct: 253 RAPAPPVPAPLAPTPPIPTPPALAPPVDVPPGFTVSPTTTRYSFG 297


>07_03_1500 +
           27001842-27002058,27002144-27002283,27002458-27002549,
           27002680-27002776,27002871-27002951,27003031-27003263,
           27003876-27004070,27004149-27004239,27004324-27004446,
           27004542-27004692,27005060-27005262
          Length = 540

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = +2

Query: 302 MRCLLIISALLATARSKQIPLTDLPGTTVAAVSESDTTSWPGAVAALDSLTVACEKDSM 478
           M C ++IS  L    + Q    DL       + ESD     G V  +DS+  AC   S+
Sbjct: 262 MHCDILISTPLRLDHAVQKRDLDLSRVEYLVLDESDKLFELGFVEVIDSVVKACSNPSI 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,565,988
Number of Sequences: 37544
Number of extensions: 335778
Number of successful extensions: 1186
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)