Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0309
         (597 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_10403| Best HMM Match : Death (HMM E-Value=9.3e-08)                 31   0.93 
SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)           30   1.6  
SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)                   29   2.9  
SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.7  

>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
 Frame = +2

Query: 341  ARSKQIPLT-DLPGTTVAAVSE--SDTTSWPGAVAALDSLTV 457
            A +  +P+T  +PGTTVAA +    DTT+ PG  AAL++  V
Sbjct: 2436 AETTAVPVTTSVPGTTVAAETTVVRDTTAVPGTTAALEATAV 2477



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 365  TDLPGTTVAAVSE--SDTTSWPGAVAALDSLTV 457
            T +PGTTVAA +    DTT+ PG  AA ++  V
Sbjct: 2680 TSVPGTTVAAETTVVRDTTAVPGTTAAPEATAV 2712


>SB_10403| Best HMM Match : Death (HMM E-Value=9.3e-08)
          Length = 302

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = -1

Query: 504 RFASVMVTCMLSFSQATVRESRAATAPGHDVVSDSDTAATVVPGKSVSGICLERAVASSA 325
           +F +V+  C+ S S   +   R   +P    +   +    ++  KS+S  C       SA
Sbjct: 130 KFNNVVQQCLESLSTVQIECLRRQPSPTMAFLDQLEAKMPLLSVKSISDACEMSGATHSA 189

Query: 324 LIINKHLI 301
           L+I+K+L+
Sbjct: 190 LLIDKYLM 197


>SB_34706| Best HMM Match : Ion_trans_2 (HMM E-Value=2.1e-16)
          Length = 514

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 301 NEVFIDNKRAARDRAFQANPANRFTGN 381
           +E +IDN +  RD+ F A  AN  TGN
Sbjct: 484 HESWIDNLKKLRDKQFNAANANHITGN 510


>SB_46345| Best HMM Match : AAA_5 (HMM E-Value=0.053)
          Length = 636

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 113 HNKISSSVFPYTKQKTDTDYVYSSCAQRNVVLVCKHCVSCVFMCPKH 253
           H+ I S V  + KQ  DT  ++      +   V ++CV  V M P H
Sbjct: 365 HHSILSPVVHHDKQCLDTQLMFDWLLPPSTDFVLRNCVGFVKMSPMH 411


>SB_9093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 122

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = -1

Query: 336 ASSALIINKHLIFQSVFKFKS*ALKKPSCFGHIKTQDTQCLHTKTTF 196
           +S A  ++K L+F S+   ++ +L KPS F  +++     LH  + F
Sbjct: 49  SSQAFSLHKPLVFTSLQSSQAFSLHKPSVFTSLQSSQAFSLHKPSVF 95


>SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 398 SESDTTSWPGAVAALDSLTVACEKDSMQVTITLAKRDPEINS 523
           S+SDT  WPG +A + S  +A +    +   TL KR  E+ +
Sbjct: 233 SKSDTVPWPGMLAVVQSY-MAHKTAKEEERNTLLKRSEELKA 273


>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3213

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = +3

Query: 426  APSLPWTLSPSPARKTACKSPLHWRNGTPKSIAST 530
            A +L  +LS SPA K   +SPL +  G PK I  T
Sbjct: 2798 ASNLKSSLSESPAEKEQVRSPLEFDPG-PKEIQKT 2831


>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 23/85 (27%), Positives = 41/85 (48%)
 Frame = +2

Query: 338  TARSKQIPLTDLPGTTVAAVSESDTTSWPGAVAALDSLTVACEKDSMQVTITLAKRDPEI 517
            TA+S    L++         SES  +S     +A  SLT      S Q++ +  K  P++
Sbjct: 995  TAQSLDSSLSERLVECAPTPSESGASSQALGSSAAPSLTEVATNSSGQLSSSFPKGLPDL 1054

Query: 518  NSIYDIFNGIVYPAGLGSNSSCLRE 592
            ++  ++ +G+     L S+SS LR+
Sbjct: 1055 SASPNLPDGV---TSLSSSSSLLRD 1076


>SB_5609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -1

Query: 36 RAEFLQPGDPLV 1
          R EFLQPGDPLV
Sbjct: 31 RIEFLQPGDPLV 42


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,109,259
Number of Sequences: 59808
Number of extensions: 395936
Number of successful extensions: 1251
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1249
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)