Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0309
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.      31   0.47 
AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle defec...    31   0.47 
U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AY714241-1|AAV68307.1|  529|Caenorhabditis elegans SPD-1 protein.
          Length = 529

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 399 PSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTPKSIASTTYSMGSSTL 557
           P++    GP  S P    PS +  +   +P+  R  TP SIAS+T S     L
Sbjct: 470 PTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTPSSIASSTPSSAKKVL 522


>AC024756-3|AAT81176.1|  529|Caenorhabditis elegans Spindle
           defective protein 1 protein.
          Length = 529

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +3

Query: 399 PSQIPRRGPAPSLPWTLSPSPARKTACKSPLHWRNGTPKSIASTTYSMGSSTL 557
           P++    GP  S P    PS +  +   +P+  R  TP SIAS+T S     L
Sbjct: 470 PTRRQAVGPKTSSPKDTQPSTSSSSRTTTPMSKRAMTPSSIASSTPSSAKKVL 522


>U88172-5|AAB42260.1|  483|Caenorhabditis elegans Hypothetical
           protein ZK354.8 protein.
          Length = 483

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 6/35 (17%)
 Frame = +3

Query: 402 SQIPRRGPAPSLPWTL------SPSPARKTACKSP 488
           SQ+PR  PAP++P ++      SPSP    A + P
Sbjct: 127 SQLPRMSPAPAIPPSMAQPLLQSPSPGADIAIRRP 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,005,401
Number of Sequences: 27780
Number of extensions: 289239
Number of successful extensions: 907
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)