Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0309
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    25   0.75 
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    24   0.98 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    24   0.98 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.3  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +3

Query: 477 CKSPLHWRNGTPKSIASTTYSMGSSTLLDLG 569
           CK  L     +PK +A    S  SS  LDLG
Sbjct: 351 CKPELGQSQSSPKFVARREESNSSSPSLDLG 381


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 QIPLTDLPGTTVAAVSESDTTSWPGAV-AALDSLTVACEKDSMQVTITLAKRDP 511
           ++P   L G TV   S ++TT  PG +  + D+    C  ++      L  R P
Sbjct: 527 RMPRYCLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGP 580


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 353 QIPLTDLPGTTVAAVSESDTTSWPGAV-AALDSLTVACEKDSMQVTITLAKRDP 511
           ++P   L G TV   S ++TT  PG +  + D+    C  ++      L  R P
Sbjct: 527 RMPRYCLFGNTVNLTSRTETTGEPGKINVSEDAYRYLCMPENQDSQFLLEYRGP 580


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -1

Query: 498 ASVMVTCMLSFSQATVRESRAATAPGHDVV 409
           A V++  +L+ +   +  +    APGHD +
Sbjct: 4   AIVLLLALLTLAAGEIAHNDPHFAPGHDAI 33


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,409
Number of Sequences: 438
Number of extensions: 3634
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)