Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0309
         (597 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    30   1.0  
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.1  
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR...    28   4.1  
At4g15236.1 68417.m02335 ABC transporter family protein similar ...    28   5.4  
At1g49870.1 68414.m05591 expressed protein ; expression supporte...    28   5.4  
At5g57930.2 68418.m07247 expressed protein                             27   9.5  
At5g57930.1 68418.m07246 expressed protein                             27   9.5  
At5g04160.1 68418.m00404 phosphate translocator-related low simi...    27   9.5  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 414 RRGPAPSLPWTLSPSP-ARKTACKSPLHWRNGTPKSI 521
           RR P+P      SPSP AR+    SPL+ RN +P  +
Sbjct: 369 RRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPL 405


>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 417 RGPAPSLPWTLSPSPARKTACKSPLHWRN 503
           R P PS+    S SP++ +  KSP+H R+
Sbjct: 272 RSPLPSVQKEGSKSPSKPSPAKSPIHTRS 300


>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
           protein identical to SP|O22315 Pre-mRNA splicing factor
           SF2 (SR1 protein) {Arabidopsis thaliana}
          Length = 303

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 417 RGPAPSLPWTLSPSPARKTACKSPLHWRN 503
           R P PS+    S SP++ +  KSP+H R+
Sbjct: 272 RSPLPSVQKEGSKSPSKPSPAKSPIHTRS 300


>At4g15236.1 68417.m02335 ABC transporter family protein similar to
           pleiotropic drug resistance like protein [Nicotiana
           tabacum] GI:20522008, ABC1 protein [Nicotiana
           plumbaginifolia] GI:14331118; contains Pfam profile
           PF00005: ABC transporter
          Length = 1388

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 178 INIISVSFLFCIRKNRTRDFVMRPFLRGSFFFSIAFVLA 62
           I I S++    +R   TRD +   +L GS FFS+  +LA
Sbjct: 515 IFIGSIAMTVYLRTGSTRDSLHANYLMGSLFFSLIKLLA 553


>At1g49870.1 68414.m05591 expressed protein ; expression supported
           by MPSS
          Length = 828

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = -1

Query: 507 SRFASVMVTCMLSFSQATVRESRAATAPGHDVVSDSDTAATVVPGKSVSGICLERAVASS 328
           S  ASV+ TC L+ + A V   R  T     +VSD+ +      G  + G        + 
Sbjct: 330 SSLASVVATCGLNEALAEVSSQRGQTTSFEPIVSDTRSRRDSKFGSLMEGKTTRDGTETE 389

Query: 327 ALIINKHLI 301
              ++K+L+
Sbjct: 390 IPSLDKYLV 398


>At5g57930.2 68418.m07247 expressed protein
          Length = 443

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 36  EAERVVAMRAKTNAIEKKNE--PRRNGLITKSLVRF-FRIQNKKLTLI 170
           +  R    R K N  + K    P +NG++ KSLV   +++ N ++ LI
Sbjct: 104 DLRRAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLI 151


>At5g57930.1 68418.m07246 expressed protein
          Length = 440

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
 Frame = +3

Query: 36  EAERVVAMRAKTNAIEKKNE--PRRNGLITKSLVRF-FRIQNKKLTLI 170
           +  R    R K N  + K    P +NG++ KSLV   +++ N ++ LI
Sbjct: 101 DLRRAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLI 148


>At5g04160.1 68418.m00404 phosphate translocator-related low
           similarity to SP|P52178 Triose phosphate/phosphate
           translocator, non-green plastid, chloroplast precursor
           (CTPT) {Brassica oleracea},
           phosphoenolpyruvate/phosphate translocator precursor
           [Mesembryanthemum crystallinum] GI:9295275
          Length = 309

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 422 PGAVAALDSLTVACEKDSMQVTITLAKRDPEINSIYDIFNGIVYPAGL 565
           P AV AL  +T+  E D + VT+TLAK+   +  +  + + + Y A L
Sbjct: 199 PIAVIALLPVTLFMEPDVISVTLTLAKQHQYMWILLLVNSVMAYSANL 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,171,614
Number of Sequences: 28952
Number of extensions: 266383
Number of successful extensions: 855
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 853
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)