Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0307
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 43 4e-05
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 40 2e-04
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 40 2e-04
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 40 2e-04
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 40 2e-04
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 40 2e-04
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 34 0.018
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 33 0.023
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 31 0.094
SPBC800.12c |||ubiquitin family protein, unknown|Schizosaccharom... 30 0.29
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 30 0.29
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.2
SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar... 27 2.0
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom... 27 2.0
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 27 2.7
SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier Hub1|Schi... 25 6.2
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 6.2
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces... 25 8.1
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 42.7 bits (96), Expect = 4e-05
Identities = 18/45 (40%), Positives = 31/45 (68%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLV 209
LKE ++ E E+ LI+AG+++ D ++LK + I+DG ++HLV
Sbjct: 29 LKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
Score = 33.5 bits (73), Expect = 0.023
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 10/66 (15%)
Frame = +3
Query: 399 LRQVLDNPLVQ----QMMNDPENMRSLITSNPQMQDL------MSRNPEISHMLNNPELL 548
L +L NP+VQ +M ++P+ + +I S+P +++ M ++PE + +P+ +
Sbjct: 144 LANMLSNPMVQSSINEMFSNPQMLDMIINSSPHLRNAPPYVRQMMQSPEFRRAMTDPDTM 203
Query: 549 RQTMEL 566
RQ +L
Sbjct: 204 RQMAQL 209
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +3
Query: 441 NDPENMRSLITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPAM 584
N P S+ NP+ + E+++ML+NP + E+ NP M
Sbjct: 120 NIPMPSASMFGPNPE-NPVPPSTEELANMLSNPMVQSSINEMFSNPQM 166
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 102 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 178 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 254 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 330 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 40.3 bits (90), Expect = 2e-04
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 33.9 bits (74), Expect = 0.018
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVI 212
+KE + K P Q LI+AGK M D + ++++ G +HLV+
Sbjct: 26 IKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVL 71
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 33.5 bits (73), Expect = 0.023
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQ--HNIKDGLTVHLVI 212
LKE+++ F ++L LI AG+++ + L++ H+ D +T HLVI
Sbjct: 29 LKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHDATDLVTFHLVI 76
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 31.5 bits (68), Expect = 0.094
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKD 188
LKE + ++ + E E+ LI++G+I+ D T+ ++NIK+
Sbjct: 27 LKEKIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKE 64
>SPBC800.12c |||ubiquitin family protein,
unknown|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLT 197
LKEVL+S+ ST+P + L++ GK + ++ L + D ++
Sbjct: 85 LKEVLASQLSTQPSSIRLMYKGKPLVNSRLLDDYVDADSVS 125
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +3
Query: 426 VQQMMNDPE---NMRSLITSNPQMQDLMSRNPEISHMLNNPELLRQTME 563
++ +++ PE N++ L+ N + + S NP++ L PE+L Q ++
Sbjct: 17 IEAILDKPEDEINLKELLEENGVLDECKSHNPKLLEYLCKPEVLSQLID 65
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/31 (35%), Positives = 22/31 (70%)
Frame = +3
Query: 399 LRQVLDNPLVQQMMNDPENMRSLITSNPQMQ 491
LR ++D+P + ++N+PE +++LI P+ Q
Sbjct: 1169 LRSIVDSPRKKIIVNNPEILQALIKLTPRNQ 1199
>SPAC23C4.09c |||DNA-binding TFAR19-related
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 131
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +3
Query: 357 QARMQQELLSNPDMLRQVLDNPLVQQMMNDPENMRSLITSNPQMQDLMSRNPEISHMLNN 536
Q +Q E+ N +L Q+L++P ++ + + ++ M++ +ISH ++
Sbjct: 37 QQEVQDEMRQN--LLSQILEHPARDRLRRIALVRKDRAEAVEELLLRMAKTGQISHKISE 94
Query: 537 PELL 548
PEL+
Sbjct: 95 PELI 98
>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/31 (35%), Positives = 23/31 (74%)
Frame = +3
Query: 375 ELLSNPDMLRQVLDNPLVQQMMNDPENMRSL 467
+LL + L++ D+ L+QQ+++DPE +++L
Sbjct: 654 DLLYSHLSLKEGQDDSLIQQIISDPETVKTL 684
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 191 PIFDVVLLQGIGIIHDFPGENKT*LFWFCTEF*RQHFF 78
P FD+V + + + D + K L W EF R H F
Sbjct: 193 PAFDLVATEDVTTVTDLFQDWKNNLIWESAEFVRVHVF 230
>SPBC31E1.03 |hub1|ubl4|ubiquitin-like protein modifier
Hub1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 73
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +3
Query: 78 KEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHL 206
K++++++ T+P ++ L + D TL + I DG+++ +
Sbjct: 28 KKLVAAQTGTDPRRIVLKKWHSVFKDNITLADYEIHDGMSLEM 70
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 25.4 bits (53), Expect = 6.2
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Frame = -2
Query: 512 WISR-HEILHLWVGGDE 465
WIS H +LH+W G+E
Sbjct: 619 WISEAHTLLHIWYNGNE 635
>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 8.1
Identities = 8/35 (22%), Positives = 21/35 (60%)
Frame = +3
Query: 474 SNPQMQDLMSRNPEISHMLNNPELLRQTMELARNP 578
S+P+ + ++ NPE + +L + + + ++ +NP
Sbjct: 138 SDPKFMEKLASNPETASLLADSAFMAKLQKIQQNP 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,349,545
Number of Sequences: 5004
Number of extensions: 45219
Number of successful extensions: 140
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -