Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0307
(585 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0) 40 0.001
SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0) 40 0.001
SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037) 38 0.006
SB_57465| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10) 35 0.043
SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29) 31 0.52
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 31 0.69
SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2) 29 3.7
SB_46400| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0) 28 6.4
SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034) 28 6.4
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_55194| Best HMM Match : Protamine_P1 (HMM E-Value=5.6) 27 8.5
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
>SB_33021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 157
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SB_57838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 533
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 178 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 330 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 406 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 452
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 482 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 528
>SB_46051| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 381
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 102 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 148
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 178 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 224
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 254 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 300
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 330 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 376
>SB_25984| Best HMM Match : ubiquitin (HMM E-Value=0)
Length = 147
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K + K P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
>SB_20850| Best HMM Match : ubiquitin (HMM E-Value=0.00037)
Length = 150
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +3
Query: 111 PEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
P+Q LIFAGK + D TL +NI+ T+HLV++
Sbjct: 4 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 38
>SB_57465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 35.5 bits (78), Expect = 0.032
Identities = 21/69 (30%), Positives = 35/69 (50%)
Frame = +3
Query: 366 MQQELLSNPDMLRQVLDNPLVQQMMNDPENMRSLITSNPQMQDLMSRNPEISHMLNNPEL 545
+ Q++ SNP ML+Q++ P +QQMM + SNP + S N ++ + E
Sbjct: 4 LMQQMSSNPQMLQQMMQAPYMQQMMQQ-------MVSNPDLMSNKSANKRRHAIVVDAED 56
Query: 546 LRQTMELAR 572
+ T L+R
Sbjct: 57 ILMTKSLSR 65
>SB_41074| Best HMM Match : ubiquitin (HMM E-Value=2.3e-10)
Length = 333
Score = 35.1 bits (77), Expect = 0.043
Identities = 14/47 (29%), Positives = 30/47 (63%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIKDGLTVHLVIK 215
+K ++ +K +Q L+F G++++D DT ++ I G T+HL+++
Sbjct: 97 VKYLIEAKGGYPKDQQRLVFNGQVLSDEDTFEKVGIFAGATLHLIVR 143
>SB_28758| Best HMM Match : ubiquitin (HMM E-Value=1.5e-29)
Length = 142
Score = 31.5 bits (68), Expect = 0.52
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +3
Query: 75 LKEVLSSKFSTEPEQLCLIFAGKIMNDADTLKQHNIK 185
+K + K P+Q LIFAGK + D TL +NI+
Sbjct: 104 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 140
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 31.1 bits (67), Expect = 0.69
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = +3
Query: 126 LIFAGKIMNDADTLKQHNIKDGLTVHLVI 212
LI+AGKI+ND + LK++NI + V +++
Sbjct: 112 LIYAGKILNDDNPLKEYNIDEKSFVVIMV 140
>SB_13250| Best HMM Match : Toxin_22 (HMM E-Value=1.2)
Length = 376
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = -2
Query: 368 HSSLEIHKSTLTKA-QAFKTRQPTQRV*TKWC 276
HS+ +I + ++T A + TRQPT R+ WC
Sbjct: 236 HSTTDITEISVTDALERTITRQPTSRILASWC 267
>SB_46400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -3
Query: 505 LDMRSCICGLEVMRLRIFSGSFIICCTNGLSKTCLSISGLDRSSCCILAWRSIKVL*P 332
++MR I ++ + + F+ + C KTCL ++ D +C LA IK+ P
Sbjct: 44 VEMRDSIGRIKRLEIGEFAAAAAADCPARDVKTCLPLAARDIKTCLPLAAHDIKIRLP 101
>SB_31174| Best HMM Match : LIM_bind (HMM E-Value=0)
Length = 609
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 381 LSNPDMLRQVLDNPLVQQMMNDPENMRSLITSNPQMQDLMSRN 509
+ +P ML QV N Q M N N L MQ+LMSR+
Sbjct: 487 MQDPGMLEQVSKNVTRQGMTNFTLNYLRLCVILEPMQELMSRH 529
>SB_1398| Best HMM Match : fn3 (HMM E-Value=0.0034)
Length = 2245
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 334 VRVLLWISRLECNRNFCPTLICSDKS*TIHWCSR 435
+RV LW L C R C CS K I WCS+
Sbjct: 462 IRVWLWYRLLLCIRIRCKPWWCSIK---IEWCSK 492
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 447 PENMRSLITSNPQMQDLMSRNPEISHMLNNPELLRQTMELARNPA 581
P +R L TSNP ++D P H++N Q + L R P+
Sbjct: 3499 PVQIRPLATSNPGLEDDHRPVPVTGHVINAGPSRAQHVFLRRQPS 3543
>SB_55194| Best HMM Match : Protamine_P1 (HMM E-Value=5.6)
Length = 203
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +3
Query: 429 QQMMNDPENMRSLITSN--PQMQDLMSRNPEISHMLNN 536
QQ MND N + + N ++ DL+SR P +S ++ +
Sbjct: 90 QQRMNDIMNRQRRVIMNLKKRVNDLLSRQPRVSSLMTD 127
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1
Query: 211 LKLLQDQNRRVRLVD--PQLTSVLHHLV*TRWVGWRVLKAW 327
LKL+ D N+ +R + P ++ + V + +VG VLK+W
Sbjct: 1032 LKLVVDVNKHLRPISLTPAISKLAEEFVVSSYVGPAVLKSW 1072
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,712,032
Number of Sequences: 59808
Number of extensions: 361654
Number of successful extensions: 895
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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