Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0306
         (382 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1FRT8 Cluster: Lysine decarboxylase; n=14; Gammaproteo...    33   2.4  
UniRef50_UPI0000E4A635 Cluster: PREDICTED: hypothetical protein,...    32   3.2  
UniRef50_UPI00006CFB7F Cluster: hypothetical protein TTHERM_0048...    32   3.2  

>UniRef50_A1FRT8 Cluster: Lysine decarboxylase; n=14;
           Gammaproteobacteria|Rep: Lysine decarboxylase -
           Stenotrophomonas maltophilia R551-3
          Length = 762

 Score = 32.7 bits (71), Expect = 2.4
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 18  RMTFKFRAHFVRAPGPPVFMSRGRACVAVLPSKTIKHASWFVFLSRSSDPILHRVRLWTA 197
           R+T   R    R    PVF+   R  +  +PSK +K+   F+FL   +   + R  +  A
Sbjct: 79  RLTAFLREQSARRANLPVFLYGERRTIEKVPSKLLKYIHGFIFLFEDTKSFISRQVMRAA 138

Query: 198 E 200
           E
Sbjct: 139 E 139


>UniRef50_UPI0000E4A635 Cluster: PREDICTED: hypothetical protein,
           partial; n=3; Strongylocentrotus purpuratus|Rep:
           PREDICTED: hypothetical protein, partial -
           Strongylocentrotus purpuratus
          Length = 1016

 Score = 32.3 bits (70), Expect = 3.2
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = -2

Query: 282 ENIFILYKVCPLNLNVIAGFLIKVVYVTLQSIILLCVKLGHCCVKGRQTKKHVLLSLKVT 103
           EN+ +  K CP     I    + +  VT +++    V   HC + G  TK ++ LSL  T
Sbjct: 753 ENVILTQKNCPEKPFKILSTWLNITNVTEEALGRYQV---HCKISGFLTKVNLTLSLATT 809

Query: 102 QQHML 88
           ++H++
Sbjct: 810 EEHVV 814


>UniRef50_UPI00006CFB7F Cluster: hypothetical protein
           TTHERM_00486380; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00486380 - Tetrahymena
           thermophila SB210
          Length = 636

 Score = 32.3 bits (70), Expect = 3.2
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = -2

Query: 321 FNSSDMRMLFITKENIFILYKVCPLNLNVIAGFLIKVVYVTLQSIILLCVKLGHCCVKGR 142
           +NS ++   F+ ++ I        L   VIA  +I V+ V L  II +C+K+        
Sbjct: 489 YNSYNLTQFFMERDLIINKVYADKLTAGVIAAIVISVLVVVLGIIICICIKIKRQRAYKY 548

Query: 141 QTKKHV--LLSLKVTQQHML 88
             +K +  L + K+T  H L
Sbjct: 549 TLQKELDTLKNSKITHHHPL 568


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 373,210,021
Number of Sequences: 1657284
Number of extensions: 6793469
Number of successful extensions: 15060
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15057
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14868845845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)