Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0306
         (382 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   4.0  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    24   7.0  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    24   7.0  

>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = -2

Query: 336 KLNDKFNSSDMRMLFITKENIFILYKVCPLNLNVIAGFLIKVV 208
           KL  K+NS +  +  + + ++++LY      L ++ G L+++V
Sbjct: 406 KLLSKYNSRENMITKLRESSLYLLYAPTDAFLLLLLGLLMRLV 448


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 168 LGHCCVKGRQTKKHVLLSLKVTQQHMLYLCS*RQGGQG 55
           LGHC VK R    +  LS+ + Q  +L   +   GG+G
Sbjct: 545 LGHCIVKARFPLGNKELSISLFQACVLLQFNNCLGGEG 582


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = -1

Query: 235 HCWLSYKSGLRHSAVHNLTLCKIGSLLRERKTNQEACFIVFE 110
           HCW+ Y+S    S V N  L     LL +  T  E    V E
Sbjct: 175 HCWVDYESNDIES-VQNCWLGDENLLLADVDTENEVVLSVLE 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,659
Number of Sequences: 5004
Number of extensions: 29386
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)