Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0306
         (382 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0589 + 18797422-18797868                                         29   1.2  
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068...    28   2.2  
06_02_0016 - 10623796-10625317,10626493-10627541                       28   2.2  
10_08_0878 - 21239104-21239968,21242008-21242927                       26   8.7  

>09_04_0589 + 18797422-18797868
          Length = 148

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = -1

Query: 154 RERKTNQEACFIVFEGNTATHALPLLMKTGGPGARTKCALNLNV 23
           + R+T++ A   V  G  A HA PL+ KT   G R  C   L+V
Sbjct: 103 KRRRTSRVAPLAVVSGIDA-HATPLMAKTRKCGRRRACVRRLSV 145


>06_03_1205 -
           28406183-28406218,28406462-28406548,28406769-28406830,
           28407968-28408184,28408793-28408957,28409145-28409250,
           28409830-28410071,28410493-28410605,28410848-28411043,
           28411681-28411827,28412034-28412218,28412478-28412592,
           28413237-28413728
          Length = 720

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 39  AHFVRAPGPPVFMSRGRACVAVLPSKTIKHASWF-VFLSRSSDPILHR 179
           AH +R   PP F    R C   LPSK +  A+   + L+R S P   R
Sbjct: 21  AHLLRLSRPPPFPHLRRRCAPHLPSKPLNLAARSPLLLARRSLPFAPR 68


>06_02_0016 - 10623796-10625317,10626493-10627541
          Length = 856

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 124 NMLLGLSSFHAAVT-QFYTE*DYGLQSDVDHFYKKASNDIQVQGAHFVQYKYIFFCN 291
           + +L L++  A++T Q   +   G+ S+ D  Y + + D  +   H  +YK  F+CN
Sbjct: 373 DFVLLLATLAASITYQAGLDPPGGVWSEDDKLYGRKAGDPILLSTHVERYKAFFYCN 429


>10_08_0878 - 21239104-21239968,21242008-21242927
          Length = 594

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -1

Query: 178 LCKIGSLLRERKTNQEACFIVFEGNTATHALPLLMKTGGPGAR 50
           LC +G  + +    +     +FE   AT  + L + T  PG R
Sbjct: 85  LCLLGGFVADTYLGRYLTIAIFEAVQATGVMILTISTAAPGLR 127


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,200,976
Number of Sequences: 37544
Number of extensions: 191084
Number of successful extensions: 412
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)