Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0306
         (382 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.7  
SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)                 27   3.9  
SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.0  

>SB_47416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/43 (30%), Positives = 26/43 (60%)
 Frame = -2

Query: 210  VYVTLQSIILLCVKLGHCCVKGRQTKKHVLLSLKVTQQHMLYL 82
            +++ LQS+++ C    H C + R+ +K +   L   Q+H+L+L
Sbjct: 1363 LFILLQSLVMACQ--AHSCEELRELEKDLWRFLDNEQKHLLHL 1403


>SB_47323| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-09)
          Length = 508

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 244 LECHCWLSYKSGLRHSAVHNLTLC 173
           L  HC LSY S + H  V+ + LC
Sbjct: 125 LAIHCGLSYPSTITHRRVYVIVLC 148


>SB_58420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 679

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -3

Query: 314 LQICECYLLQKKIYLYCT 261
           +Q+ + ++L+KK Y+YCT
Sbjct: 454 IQLTQRFVLKKKYYMYCT 471


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,150,447
Number of Sequences: 59808
Number of extensions: 237154
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 644574580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)