Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0306
         (382 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein...    29   6.6  
AC068195-1|AAX93243.1| 1126|Homo sapiens unknown protein.              29   6.6  
AB209707-1|BAD92944.1| 1720|Homo sapiens low density lipoprotein...    29   6.6  
L07807-1|AAA02803.1|  864|Homo sapiens dynamin protein.                28   8.7  
BC063850-1|AAH63850.1|  851|Homo sapiens dynamin 1 protein.            28   8.7  
AL590708-18|CAI13837.1|  864|Homo sapiens dynamin 1 protein.           28   8.7  
AL590708-17|CAI13839.2|  851|Homo sapiens dynamin 1 protein.           28   8.7  
AB209124-1|BAD92361.1|  600|Homo sapiens dynamin 1 isoform 2 var...    28   8.7  

>AF176832-1|AAF70379.1| 4599|Homo sapiens low density lipoprotein
            receptor related protein-deleted in tumor protein.
          Length = 4599

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 247  ELECHCWLSYKSGLRHSAVHNLTLCKIG 164
            +L CHCW SY SG R    H    C+ G
Sbjct: 4234 DLRCHCWPSY-SGERCEVNHCSNYCQNG 4260


>AC068195-1|AAX93243.1| 1126|Homo sapiens unknown protein.
          Length = 1126

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 247  ELECHCWLSYKSGLRHSAVHNLTLCKIG 164
            +L CHCW SY SG R    H    C+ G
Sbjct: 1092 DLRCHCWPSY-SGERCEVNHCSNYCQNG 1118


>AB209707-1|BAD92944.1| 1720|Homo sapiens low density
            lipoprotein-related protein 1B variant protein.
          Length = 1720

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 247  ELECHCWLSYKSGLRHSAVHNLTLCKIG 164
            +L CHCW SY SG R    H    C+ G
Sbjct: 1355 DLRCHCWPSY-SGERCEVNHCSNYCQNG 1381


>L07807-1|AAA02803.1|  864|Homo sapiens dynamin protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 324 KFNSSDMRMLFITKENIFILYKVCPLNLNVIAGFLIKV 211
           +F   DM M F+TKEN  IL  V P N ++     +KV
Sbjct: 153 EFQIRDMLMQFVTKENCLIL-AVSPANSDLANSDALKV 189


>BC063850-1|AAH63850.1|  851|Homo sapiens dynamin 1 protein.
          Length = 851

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 324 KFNSSDMRMLFITKENIFILYKVCPLNLNVIAGFLIKV 211
           +F   DM M F+TKEN  IL  V P N ++     +KV
Sbjct: 153 EFQIRDMLMQFVTKENCLIL-AVSPANSDLANSDALKV 189


>AL590708-18|CAI13837.1|  864|Homo sapiens dynamin 1 protein.
          Length = 864

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 324 KFNSSDMRMLFITKENIFILYKVCPLNLNVIAGFLIKV 211
           +F   DM M F+TKEN  IL  V P N ++     +KV
Sbjct: 153 EFQIRDMLMQFVTKENCLIL-AVSPANSDLANSDALKV 189


>AL590708-17|CAI13839.2|  851|Homo sapiens dynamin 1 protein.
          Length = 851

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 324 KFNSSDMRMLFITKENIFILYKVCPLNLNVIAGFLIKV 211
           +F   DM M F+TKEN  IL  V P N ++     +KV
Sbjct: 153 EFQIRDMLMQFVTKENCLIL-AVSPANSDLANSDALKV 189


>AB209124-1|BAD92361.1|  600|Homo sapiens dynamin 1 isoform 2
           variant protein.
          Length = 600

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 324 KFNSSDMRMLFITKENIFILYKVCPLNLNVIAGFLIKV 211
           +F   DM M F+TKEN  IL  V P N ++     +KV
Sbjct: 86  EFQIRDMLMQFVTKENCLIL-AVSPANSDLANSDALKV 122


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,707,967
Number of Sequences: 237096
Number of extensions: 1134444
Number of successful extensions: 2271
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2271
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2526356360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)