Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0306
         (382 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical pr...    27   3.4  
U56964-5|AAB54032.1|  454|Caenorhabditis elegans Warthog (hedgeh...    27   3.4  
AF016663-1|AAC70877.1|  154|Caenorhabditis elegans Hypothetical ...    27   3.4  
U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical pr...    27   4.5  
U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AF040645-6|AAB94976.1|  301|Caenorhabditis elegans Hypothetical ...    26   7.9  

>Z81102-1|CAB03202.1|  320|Caenorhabditis elegans Hypothetical
           protein M02B1.3 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -1

Query: 244 LECHCWLSYKSGLRHSAVHNLTLCKIGSLL 155
           ++ +CWLS++ G++   + NLT   I S +
Sbjct: 72  VQYNCWLSWQEGIKRKRLLNLTTSLIHSTI 101


>U56964-5|AAB54032.1|  454|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 2 protein.
          Length = 454

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 45  FVRAPGP-PVFMSRGRACVAVLPSKTIKHASWFVFLSRSSDPILHRVRL 188
           F+++P   P F+ +   C     SKT +   W   LS  SDP   ++ +
Sbjct: 79  FIKSPSKNPNFVPQLAICTDEYKSKTCEEGEWVGGLSPQSDPFADQLEM 127


>AF016663-1|AAC70877.1|  154|Caenorhabditis elegans Hypothetical
           protein F21E9.2 protein.
          Length = 154

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 199 SAVHNLTLCKIGSLLRER--KTNQEACFIVFEGNTATHALPLLMKTG 65
           +A  NL    +G  +R+   +T Q  CF  +  NTA  A+P L + G
Sbjct: 30  TAAQNLVRHSLGGFIRQEVSETGQTICF--YRYNTADTAIPYLCELG 74


>U40030-6|AAA81135.3|  431|Caenorhabditis elegans Hypothetical
           protein T13C2.3a protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 68  CLHEQR*SMCCCVTFKDNKTC 130
           C H Q  ++CCC    D ++C
Sbjct: 269 CYHHQGHTICCCFVAPDKESC 289


>U40030-5|AAR12976.2|  506|Caenorhabditis elegans Hypothetical
           protein T13C2.3b protein.
          Length = 506

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 68  CLHEQR*SMCCCVTFKDNKTC 130
           C H Q  ++CCC    D ++C
Sbjct: 344 CYHHQGHTICCCFVAPDKESC 364


>AF040645-6|AAB94976.1|  301|Caenorhabditis elegans Hypothetical
           protein F52C6.10 protein.
          Length = 301

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +2

Query: 56  PWPPCLHEQR*SMC---CCVTFKDNK 124
           PW  C+H +  +MC   CC+  ++++
Sbjct: 37  PWQMCIHRENGNMCVILCCLKVEEDR 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,054,752
Number of Sequences: 27780
Number of extensions: 175741
Number of successful extensions: 422
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 567749674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)