Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0306
         (382 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa...    30   0.60 
At1g13150.1 68414.m01525 cytochrome P450, putative strong simila...    27   3.2  
At5g36210.1 68418.m04365 expressed protein                             27   5.6  
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote...    27   5.6  
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote...    27   5.6  
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ...    26   7.4  
At1g44020.1 68414.m05078 DC1 domain-containing protein contains ...    26   7.4  
At1g22610.1 68414.m02823 C2 domain-containing protein contains I...    26   7.4  
At4g13760.1 68417.m02135 glycoside hydrolase family 28 protein /...    26   9.7  
At2g40310.1 68415.m04966 glycoside hydrolase family 28 protein /...    26   9.7  
At1g32190.1 68414.m03959 expressed protein                             26   9.7  

>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger); similar to GI:4928397
           from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
           579-590 (1999))
          Length = 413

 Score = 29.9 bits (64), Expect = 0.60
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 229 WLSYKSGLRHSAVHNLTLC--KIGSLLRERKTNQEACFIVFEGNTATHALP 83
           WL   +GL+ S ++++T+C  K G  L ER T+   C   FE + +   LP
Sbjct: 145 WLIRTTGLQQSIINSITICNYKRGDGLIER-TDCPVCLNEFEEDESLRLLP 194


>At1g13150.1 68414.m01525 cytochrome P450, putative strong
           similarity to gi|3313615 F21J9.9 from Arabidopsis
           thaliana and is a member of the PF|00067 Cytochrome P450
           family
          Length = 529

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 244 LECHCWLSYKSGLRHSAVHNLTLCKIGSLLRER----KTNQEACFIVFEGNTATHALPLL 77
           L   CW+  K    H  V N  +C+I  +LR+R     +  E+ F V E N   +    L
Sbjct: 325 LSWFCWVIQK----HPEVENKIICEIREILRQRGDSPTSKNESLFTVKELNNMVYLQAAL 380

Query: 76  MKT 68
            +T
Sbjct: 381 SET 383


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = -1

Query: 85  PLLMKT-GGPGARTKCALNLNV 23
           PLL+K+ GGP A ++ +LNLN+
Sbjct: 439 PLLVKSHGGPTAESRGSLNLNI 460


>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 559

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  GPPVFMSRGRACVAVLPSKTIKHASWF 140
           GPPV   + +ACVAV PS       WF
Sbjct: 170 GPPVHTFK-QACVAVYPSTVQHEIIWF 195


>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 536

 Score = 26.6 bits (56), Expect = 5.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  GPPVFMSRGRACVAVLPSKTIKHASWF 140
           GPPV   + +ACVAV PS       WF
Sbjct: 170 GPPVHTFK-QACVAVYPSTVQHEIIWF 195


>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 439

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 8   IRHEDDIQVQGTLCTCPWPPCLH 76
           ++ +++I+V+  +  CP P CLH
Sbjct: 96  LKRDNNIEVKKRVYVCPEPTCLH 118


>At1g44020.1 68414.m05078 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 577

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = -3

Query: 323 SSILQICECYLLQ---KKIYLYCTKC 255
           SSI+Q  +C+      KKI+ YCT C
Sbjct: 346 SSIIQTRKCFCCDEDLKKIFYYCTGC 371


>At1g22610.1 68414.m02823 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1029

 Score = 26.2 bits (55), Expect = 7.4
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = +3

Query: 30  KFRAHFVRAPGPP 68
           +FR+ F+RAPGPP
Sbjct: 228 EFRSDFMRAPGPP 240


>At4g13760.1 68417.m02135 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
           (Pectinase) (Galacturan 1,4-alpha-galacturonidase) {Zea
           mays}; contains PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 375

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 53  CPWPPCLHEQR 85
           CP PPC HEQ+
Sbjct: 288 CPHPPCEHEQK 298


>At2g40310.1 68415.m04966 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           SP|P35339 Exopolygalacturonase precursor (EC 3.2.1.67)
           (Pectinase) {Zea mays}; contains Pfam profile PF00295:
           Glycosyl hydrolases family 28
           (polygalacturonases)(Galacturan
           1,4-alpha-galacturonidase)
          Length = 404

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 53  CPWPPCLHEQR 85
           CP PPC HEQ+
Sbjct: 317 CPHPPCEHEQK 327


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 32  VQGTLCTCPWPPCLHEQR*SMCCCVTFKDNKTCF 133
           ++G    C  P C+     S CCC TFK + +CF
Sbjct: 336 LKGCFSCCKKPSCV-----SSCCCPTFKCS-SCF 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,302,747
Number of Sequences: 28952
Number of extensions: 156008
Number of successful extensions: 353
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 527724392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)