Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0304
(637 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 162 3e-41
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy... 29 0.43
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 27 3.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 27 3.0
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 4.0
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo... 26 4.0
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 26 5.2
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.2
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 25 6.9
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 162 bits (394), Expect = 3e-41
Identities = 73/178 (41%), Positives = 109/178 (61%)
Frame = +3
Query: 96 AIVLFFLGNFGITAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQNTIFTWVRDHRLHHKY 275
AI+ + GITAG HRLWSH YK K PLE L + AF+ +I W RDHR HH+Y
Sbjct: 94 AIIYYAYSGLGITAGYHRLWSHRAYKAKKPLEYFLAAGGAAAFEGSIRWWSRDHRAHHRY 153
Query: 276 TDTDADPHNATRGFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYCNPLLRFQKKYAIPFIG 455
TDTD DP+N +GF+++H+GW+++ ++P + G+S D+SD+ +P + F ++ +P
Sbjct: 154 TDTDKDPYNVKKGFWYAHVGWMIILQNP--RRIGRS-DVSDLNSDPFVMFNHRHFLPIAS 210
Query: 456 TICFIIPTLAPMYFWGESLNNAWHITVLRYIFSLNGTFLVNSAAHLWGYKPYDKSLKA 629
+ FI P+L WG+ ++ V R +F + TF VNS AHL G +P+D + A
Sbjct: 211 FMAFIFPSLFCGLLWGDYRGGYFYAGVCRLVFVHHATFCVNSLAHLIGSQPFDDTNSA 268
>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 29.5 bits (63), Expect = 0.43
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -3
Query: 260 PVISHPCENGVLKSNTVEDHQQDLEGQFDFVT 165
P I EN + +SNTVE+ +++E QF+ V+
Sbjct: 297 PEIHESSENYLSRSNTVENEPENIEKQFESVS 328
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -2
Query: 342 TTSRCVRKKNLS*HYEGLHQC 280
T + V KKN+S H+EG+ +C
Sbjct: 1538 TDALLVLKKNISMHFEGVEEC 1558
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.6 bits (56), Expect = 3.0
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 4/97 (4%)
Frame = +3
Query: 279 DTDADPHNATRGFFFSHI--GWLLVRKHPMVKIAGKS-LDMSDIYCNPLLRFQKKYAIPF 449
+T P T FS I GWL P++K ++ L SD + P I F
Sbjct: 169 ETGLRPSRFTYANIFSRISFGWL----SPLMKFGYRNYLTESDAWSLPPAERSSNLTIVF 224
Query: 450 IGT-ICFIIPTLAPMYFWGESLNNAWHITVLRYIFSL 557
I + +Y WG N W +TV+ + L
Sbjct: 225 EKNWISHAKKKKSSLYMWGVLFLNHWKLTVVIIVLKL 261
>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 471
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 69 SKIGYIGCCAIVLFFLGNFGITAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQ 227
SK+G++GC +V+F + G +A + N Y+ +P+ M++N +FQ
Sbjct: 273 SKLGFVGC--LVIFVVAFSGFSA----YFLLNAYQASVPI-YTSMLYNYSSFQ 318
>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1369
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 492 YFWGESLNNAWHITVLRYIFSLNGTFLV 575
+FWG L W I V+ F L G +L+
Sbjct: 1181 FFWGSKLTKLWKIVVMTVSF-LVGAWLI 1207
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = -2
Query: 447 MVLRTFSEILKEDYNKYLTCQGSFQQFS-PLDVFAPTTSRCVRKKNL 310
MV+R + +E+Y KY G F+Q + L + PT ++ +NL
Sbjct: 31 MVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENL 77
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 25.8 bits (54), Expect = 5.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 57 LFHLSKIGYIGCCAIVLFFL 116
+F LS + Y GCC I++FF+
Sbjct: 616 IFFLSAVIY-GCCFIIIFFM 634
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 6.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 381 SFQQFSPLDVFAPTTSRCVRKKN 313
SF +PL VFAP TSR +R N
Sbjct: 201 SFDPLAPL-VFAPNTSRVLRVTN 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,513
Number of Sequences: 5004
Number of extensions: 61041
Number of successful extensions: 163
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -