Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0304
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0042 - 10901321-10901486,10903417-10903517,10903696-109038...    30   1.8  
05_02_0072 - 6334613-6335215                                           29   2.3  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    29   3.1  
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300...    29   4.1  
01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124     29   4.1  
01_06_0249 + 27868897-27871599                                         28   7.1  

>06_02_0042 -
           10901321-10901486,10903417-10903517,10903696-10903894,
           10904642-10904769
          Length = 197

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +2

Query: 338 VVGAKTSNGENCWKEP*HVRYLL*SSFKISEKVRNTIYRNNMFYHTDISSNVF 496
           + G      E  W+ P  +RYL   + K+  K+R   ++  ++++ ++  N+F
Sbjct: 103 LTGVARPETEEDWRIP-LIRYLKVPTLKVDRKIRRQAFKYTLYWNVELWKNLF 154


>05_02_0072 - 6334613-6335215
          Length = 200

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 312 GFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYCNPLLRFQKKYAIP 446
           GF  SH+   L+R HP  ++   +LD  D YC  L       A P
Sbjct: 33  GFIASHVANRLLRDHPSYRVV--ALDKLDDYCATLNNLAPAMASP 75


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 162 NGYKVKLPLEI-LLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHNATRGFFFSHIGW 338
           N Y V+  LE  LL +F  + F NT    V    +H+ +   DA+P N      F+ IG 
Sbjct: 736 NEYSVRRALEAYLLWLFGWVMFTNTHGHAVDKGLIHYAWAIVDAEPENLWATERFA-IGR 794

Query: 339 LLVRKHPMVKIAGKSLD 389
           L+V   P     G+S +
Sbjct: 795 LVV--DPTAYTIGRSAE 809


>06_03_0742 +
           24027506-24027721,24028835-24029004,24029893-24030052,
           24030162-24030455,24031490-24031717,24031827-24032006,
           24032079-24032238,24032591-24032617,24033426-24033613,
           24034269-24034532,24035123-24035218,24035311-24035399,
           24035473-24035620,24035842-24036051,24036141-24036440,
           24037906-24038248,24038747-24038952,24039071-24039273,
           24040021-24040117,24040148-24040222,24040328-24040602,
           24041116-24041256,24041469-24042339,24042481-24042520,
           24042605-24043050
          Length = 1808

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +1

Query: 82  TSGVVLLCYSSLGTLVLQLELIVCGL 159
           T+GV+L  +S L T+VLQL    CG+
Sbjct: 893 TAGVLLSSFSRLFTMVLQLHGFTCGV 918


>01_06_1474 + 37630471-37631736,37631965-37632028,37632928-37633124
          Length = 508

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 46  GLYLCFTSAKLATSGVVLLCYSSLGTLVLQLEL 144
           GL LC+TS  LAT+ V  +     G  V++LE+
Sbjct: 357 GLDLCYTSESLATAKVPSMALVFAGGAVMELEM 389


>01_06_0249 + 27868897-27871599
          Length = 900

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 2   PRAAGIRHEVLLVYMDFISVSPQQNWL 82
           P   G++HE+L V  D    +P +NW+
Sbjct: 486 PMVVGMKHELLNVSYDIRYYAPPENWI 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,689
Number of Sequences: 37544
Number of extensions: 359962
Number of successful extensions: 807
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)