Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0304
         (637 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)              212   2e-55
SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)                    65   5e-11
SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)             28   5.5  
SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)                  28   7.3  

>SB_25798| Best HMM Match : FA_desaturase (HMM E-Value=0)
          Length = 268

 Score =  212 bits (518), Expect = 2e-55
 Identities = 91/172 (52%), Positives = 125/172 (72%), Gaps = 1/172 (0%)
 Frame = +3

Query: 123 FGITAGAHRLWSHNGYKVKLPLEILLMVFNSIAFQNTIFTWVRDHRLHHKYTDTDADPHN 302
           +G+T GAHRLW+H  +K K PL +++M+ NS+A QN IF W RDHR+HHKY++TDADPHN
Sbjct: 18  YGVTIGAHRLWAHRTFKAKWPLRLVIMLMNSMAAQNDIFEWSRDHRVHHKYSETDADPHN 77

Query: 303 ATRGFFFSHIGWLLVRKHPMVKIAGKSLDMSDIYCNPLLRFQKKYAIPFIGTICFIIPTL 482
           A RGFFFSH+GWL+ RKHP V   GK +D+SD+Y + ++ FQ+++       +C +IPTL
Sbjct: 78  AKRGFFFSHVGWLMQRKHPDVIRKGKGIDLSDLYADSVVMFQRRHYKKISMLMCVLIPTL 137

Query: 483 APMYFWGESLNNAWHIT-VLRYIFSLNGTFLVNSAAHLWGYKPYDKSLKATQ 635
            P   WGESL NA+  +  LRY+ +LN T+ VNS AH+WG KPYD ++   +
Sbjct: 138 VPS-LWGESLWNAYFTSFALRYVITLNVTWCVNSIAHMWGDKPYDVTINPAE 188


>SB_42121| Best HMM Match : EGF_CA (HMM E-Value=8.7)
          Length = 202

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
 Frame = +3

Query: 459 ICFIIPTLAPMYFWGESLNNAWHIT-VLRYIFSLNGTFLVNSAAHLWGYKPYDKSL 623
           +C +IPTL P   WGESL NA+  +  LRY+ +LN T+ VNS AH+WG KPYD ++
Sbjct: 10  MCVLIPTLVPS-LWGESLWNAYFTSFALRYVITLNVTWCVNSIAHMWGDKPYDVTI 64


>SB_36213| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.033)
          Length = 708

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -1

Query: 574 TRKVPLRLKM----YLKTVICQALFKLSPQKYIGANVGMIKHIVPINGIAYFF 428
           TR V LRLK     Y + + CQ   +L+ Q+ + A VG ++H  P+     FF
Sbjct: 520 TRAVELRLKAQGYNYEEVLECQFDVQLNTQRELRALVGDVEHGKPLEARDAFF 572


>SB_45095| Best HMM Match : DUF1168 (HMM E-Value=0.74)
          Length = 604

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +3

Query: 333 GWLLVRKHPMVKIAGKSLDMSDIYCNPLLRFQKKYAIPFIGTICFIIPT 479
           GW +  + P   I G+  D   I  NPL     ++ I   GT+    PT
Sbjct: 527 GWTVKPRSPTPSIDGQGEDQFVIEVNPLQMDSDEFDIQHTGTLASFDPT 575


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,816,149
Number of Sequences: 59808
Number of extensions: 452316
Number of successful extensions: 1184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)