Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0303
         (488 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)                 29   2.7  
SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)             28   3.6  
SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)                28   4.7  
SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)            27   8.3  

>SB_56841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 24/70 (34%), Positives = 29/70 (41%)
 Frame = +2

Query: 275 EFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNGTYEPNDDECLNPWRDDTEEEELA 454
           E   +E KFY EVHA               R  I +G  EP D+EC   W  D E+E+ A
Sbjct: 141 ECCKLEGKFYEEVHALECKYAEKFKPFYEKRRNIASGGVEPTDEEC--RWPSDAEDEDEA 198

Query: 455 RAVHNAAITE 484
                   TE
Sbjct: 199 EEKEEKEATE 208


>SB_16619| Best HMM Match : Dynamitin (HMM E-Value=1.1)
          Length = 667

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 227 VGMPSLLHEGDL*WPLSFHYGSRHFSTGVALVH 129
           V +PS +HE D   PL F +GS +  T + L H
Sbjct: 207 VPLPSSIHEADDMLPLCFEFGSLNSQTLLMLEH 239


>SB_51137| Best HMM Match : Fibrinogen_C (HMM E-Value=0.23)
          Length = 365

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 386 TYEPNDDECLNPWRDDTEEEEL 451
           TYE  D+ C +PW+D +++ E+
Sbjct: 268 TYERLDNSCTSPWQDVSQKSEV 289


>SB_12927| Best HMM Match : ATP-synt_A (HMM E-Value=4.3)
          Length = 477

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -2

Query: 448 LFFFSVITPWVETFIIIRFICAIHNKSSLFIKRLVKFFIFAFECMYF 308
           LFF   +T    +F +  FI   +     F K +   F++ F CMYF
Sbjct: 13  LFFLLFLTV---SFHVFMFIVVPYVTKRPFFKNIPAIFMYIFMCMYF 56


>SB_46777| Best HMM Match : RNA_pol_Rpb2_4 (HMM E-Value=2.1)
          Length = 519

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +2

Query: 134 LAQHLLKSGVTRNEMIAAITNRLHA---EAMASLPPNVRRRI 250
           L++HL  + +T  E+   +  +L     + +  +PP+VRRRI
Sbjct: 306 LSEHLRATSMTGREISGPLHRKLSTTDRQCLLGIPPSVRRRI 347


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,643,755
Number of Sequences: 59808
Number of extensions: 281408
Number of successful extensions: 659
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)