Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0303
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          23   1.7  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   1.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   7.0  

>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 24  GGESEILNMGTVERFW*RPRSPKWSLQK 107
           G E  ++N    +R+W RPR P  +  K
Sbjct: 31  GDEKWVVNNIKRKRWWSRPREPAQTTSK 58


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 407 ECLNPWRDDTEEEELA 454
           + L  W DD++EEEL+
Sbjct: 34  QMLGIWADDSDEEELS 49


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 389 YEPNDDECLNPWRDDTEEEELARAVHNAAITEG 487
           ++P D+EC          E   R  +N+ IT G
Sbjct: 199 WQPEDEECTEATAGAVVLETCQRNSNNSTITAG 231


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 439 FSVITPWVETFIIIRFICAIHN 374
           +  ITP ++  + I   C +HN
Sbjct: 312 YKYITPLIQKHLKIHDTCGVHN 333


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 261 ELFRRSLSTLRPSFTVKY 314
           E FRR +ST+   F V+Y
Sbjct: 451 EKFRRWVSTMSRPFEVRY 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,933
Number of Sequences: 438
Number of extensions: 2153
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)