Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0303
         (488 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26110.1 68417.m03759 nucleosome assembly protein (NAP), puta...    45   2e-05
At2g19480.1 68415.m02277 nucleosome assembly protein (NAP), puta...    42   2e-04
At2g26530.1 68415.m03183 expressed protein                             29   2.2  
At4g17020.2 68417.m02567 transcription factor-related contains w...    28   2.9  
At4g17020.1 68417.m02568 transcription factor-related contains w...    28   2.9  
At4g15180.1 68417.m02328 SET domain-containing protein contains ...    27   9.0  
At1g63420.1 68414.m07172 expressed protein                             27   9.0  

>At4g26110.1 68417.m03759 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 372

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +2

Query: 206 AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVNG 385
           ++ + +L PNVR+R+ ALR +Q +  ++EAKF  E                  R  IVNG
Sbjct: 41  SDVLENLTPNVRKRVDALRDIQSQHDELEAKFREERAILEAKYQTLYQPLYVKRYEIVNG 100

Query: 386 TYE----PNDDECLNPWRDDTEEEE 448
           T E    P DD  ++   + T EE+
Sbjct: 101 TTEVELAPEDDTKVDQGEEKTAEEK 125


>At2g19480.1 68415.m02277 nucleosome assembly protein (NAP),
           putative similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 379

 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = +2

Query: 203 HAEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSEVHAXXXXXXXXXXXXXXXRALIVN 382
           H++ + +L P VR+R+  LR +Q ++ ++EAKF+ E  A               R  IVN
Sbjct: 40  HSDVLENLTPPVRKRVEFLREIQNQYDEMEAKFFEERAALEAKYQKLYQPLYTKRYEIVN 99

Query: 383 GTYE 394
           G  E
Sbjct: 100 GVVE 103


>At2g26530.1 68415.m03183 expressed protein
          Length = 317

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = +3

Query: 318 HSNANMKNFTSLFMKSEXXXXXXXXXXXXXNVSTHGVMTLKKKS---*LGRYTMLPSLRV 488
           H+  ++K FTSLF K E             +VS H    + KK+    L + T LP +++
Sbjct: 253 HNKDSVKTFTSLFRKQEDTKNSSSRGRGSSSVSAHEFHYMSKKAETKDLKKKTFLPYMQI 312


>At4g17020.2 68417.m02567 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 462

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 155 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 310
           +G+T +++I  +    H   A+ + S+P NV  +IR   T  +     +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403


>At4g17020.1 68417.m02568 transcription factor-related contains weak
           similarity to Swiss-Prot:Q92759 TFIIH basal
           transcription factor complex p52 subunit (Basic
           transcription factor 52 kDa subunit, BTF2-p52, General
           transcription factor IIH polypeptide 4) [Homo sapiens]
          Length = 452

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 155 SGVTRNEMIAAITNRLH---AEAMASLPPNVRRRIRALRTLQKEFVDIEAKFYSE 310
           +G+T +++I  +    H   A+ + S+P NV  +IR   T  +     +A FY E
Sbjct: 349 NGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHFYDE 403


>At4g15180.1 68417.m02328 SET domain-containing protein contains Pfam
            profile PF00856: SET domain
          Length = 2326

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 208  CMKAICDGRYHFITGHATFQQVLR 137
            C   +C G Y  +TG   FQ+VL+
Sbjct: 1911 CGSQVCRGSYLNLTGEGAFQKVLK 1934


>At1g63420.1 68414.m07172 expressed protein
          Length = 578

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 155 SGVTRNEMIAAITNRLHAEAMASLPP 232
           +GV +  MI ++ +R HA    SLPP
Sbjct: 520 NGVDKKFMIGSLVSRPHASGPCSLPP 545


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,083,785
Number of Sequences: 28952
Number of extensions: 187562
Number of successful extensions: 448
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)