Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0300
         (643 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2I5F8 Cluster: Integrase; n=2; Beta vulgaris|Rep: Inte...    36   0.83 

>UniRef50_A2I5F8 Cluster: Integrase; n=2; Beta vulgaris|Rep:
           Integrase - Beta vulgaris (Sugar beet)
          Length = 1516

 Score = 35.9 bits (79), Expect = 0.83
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
 Frame = -2

Query: 444 VDTTKPLKQQHL-LC---EVSTRSVKIFRSVSISDFSAYNWIINLCS 316
           V TTKPL+  H+ LC    + +RS K +  V + D+S Y W+I L S
Sbjct: 743 VSTTKPLELIHIDLCGPMRIQSRSGKRYVLVIVDDYSRYTWVIFLSS 789


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,268,004
Number of Sequences: 1657284
Number of extensions: 9884775
Number of successful extensions: 17459
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 17151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17459
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)