Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0300
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    30   0.33 
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    28   1.00 
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    28   1.3  
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|...    27   3.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.3  
SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    26   5.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    25   9.3  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   9.3  

>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 14/36 (38%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = +2

Query: 104 VVAAYLYAHSR-VL*KECSPENIHANKMPKCELASF 208
           +V+A +Y HS+ VL ++  P+NI  ++   C+LA F
Sbjct: 135 LVSALIYIHSKGVLHRDVKPDNILLDEKGHCKLADF 170


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -2

Query: 237 HNTGTPAVRTKLANSHFGILLACMFSGEHSFYKTREW 127
           H  GT  V  +L  +    + AC+  G H  YKT +W
Sbjct: 142 HIRGTIVVTYQLCVTAGIFIAACINMGTHKLYKTAQW 178


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/44 (22%), Positives = 24/44 (54%)
 Frame = -2

Query: 459 LIASDVDTTKPLKQQHLLCEVSTRSVKIFRSVSISDFSAYNWII 328
           ++  D++  +PL  Q +L +  + SV+   S+ + D++   W +
Sbjct: 409 VLDKDIEPPQPLLSQLILVDEISFSVRYLASLGLGDYTKVTWFL 452


>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
           Pef1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 131 SRVL*KECSPENIHANKMPKCELASF--VRTAGVPV 232
           +RVL ++  P+N+  N   + +LA F   R+ G+PV
Sbjct: 120 NRVLHRDLKPQNLLINSRGELKLADFGLARSIGIPV 155


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -2

Query: 444 VDTTKPLKQQHLLCEVSTRSVKIFRSVSISDFSAYNWIINLCSTYYST 301
           ++T K +  +H L  VS   ++   ++SI  FS   W I  CS    T
Sbjct: 831 MNTLKTIFTEHRLSSVSVEYLEPAIALSIEGFSHELWPIRNCSVMLFT 878


>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 173 RVCFLENIPFIKLESGHIN 117
           RVC +ENI F KLE   IN
Sbjct: 60  RVCKVENIDFSKLEEETIN 78


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = -2

Query: 408 LCEVSTRSVKIFRSVSISD 352
           + E+ST S+ I +S+S+SD
Sbjct: 589 ILEISTGSISIIKSISLSD 607


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -2

Query: 363 SISDFSAYNWIINLCSTYYSTIRE*NLHI 277
           ++S+   YN + NLC   Y+T  + N+ +
Sbjct: 499 NLSESEVYNTVFNLCDELYTTPCKKNMSV 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,995
Number of Sequences: 5004
Number of extensions: 47863
Number of successful extensions: 115
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)