Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0300
         (643 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81510-2|CAB04162.1|   56|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>Z81510-2|CAB04162.1|   56|Caenorhabditis elegans Hypothetical
           protein F21D9.3 protein.
          Length = 56

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +2

Query: 347 EKSEIDTLRNIFTDRVETSQSRCCCFR 427
           +K      R IF D   T  S CCCFR
Sbjct: 26  KKGATSAKRKIFNDAPGTWSSSCCCFR 52


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -3

Query: 500 VYISEYYLINL*NDSSLRMLIRQNL*SNNICSVKFQLDQ*KYFVVYRSQISQHII 336
           V + ++ L +  N SS    I  +    + CS+  Q  + +YF++Y   ISQ I+
Sbjct: 191 VKLKQWRLASNLNISSFAASISVSYFIQSNCSIFIQSSRMQYFIIYNRCISQEIV 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,411,481
Number of Sequences: 27780
Number of extensions: 255609
Number of successful extensions: 477
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)