Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0300
         (643 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g21630.1 68415.m02573 transport protein, putative similar to ...    29   2.0  
At1g79720.1 68414.m09298 aspartyl protease family protein contai...    28   4.6  
At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,...    28   6.1  

>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 432 KPLKQQHLLCEVSTRSVKIFRSV----SISDFSAYNWIINLC 319
           KPL+ Q LL   S    +  RSV    S+ DFSA NW    C
Sbjct: 44  KPLRSQSLLLPYSPLRCRTCRSVLNPYSVVDFSACNWGCPFC 85


>At1g79720.1 68414.m09298 aspartyl protease family protein contains
           Pfam domain, PF00026: eukaryotic aspartyl protease
          Length = 484

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 323 CVVLTTLLFENKIYILLRTSQS*SKIIYFTIQE 225
           C+ L +L +EN++ I+    Q   ++IY T QE
Sbjct: 441 CLALASLSYENEVGIIGNYQQKNQRVIYDTTQE 473


>At5g20710.1 68418.m02459 beta-galactosidase, putative / lactase,
           putative strong similarity to beta-galactosidase
           precursor (EC 3.2.1.23) (Lactase) SP:P49676 from
           [Brassica oleracea]
          Length = 769

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 341 YAEKSEIDTLRNIFTDRVETSQSRCCCFRGFVVSTSEAMSRFKG 472
           Y   S ID L N     + T++    CF G V +T++A+  FKG
Sbjct: 292 YGNISRID-LGNSIKATIYTTKEGSSCFIGNVNATADALVNFKG 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,145
Number of Sequences: 28952
Number of extensions: 223411
Number of successful extensions: 492
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)