Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0297
(589 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P84029 Cluster: Cytochrome c-2; n=33; cellular organism... 46 5e-04
UniRef50_Q6IQM2 Cluster: Cytochrome c; n=15; cellular organisms|... 43 0.006
UniRef50_P62897 Cluster: Cytochrome c, somatic; n=125; Eukaryota... 41 0.019
UniRef50_P99999 Cluster: Cytochrome c; n=20; Eukaryota|Rep: Cyto... 40 0.057
UniRef50_P00056 Cluster: Cytochrome c; n=25; Eukaryota|Rep: Cyto... 38 0.17
UniRef50_P19974 Cluster: Cytochrome c; n=22; Fungi/Metazoa group... 37 0.40
UniRef50_A7Q2F8 Cluster: Chromosome chr1 scaffold_46, whole geno... 36 0.93
UniRef50_Q8UJ37 Cluster: Cytochrome c homolog; n=3; Rhizobiales|... 35 1.2
UniRef50_Q23240 Cluster: Probable cytochrome c; n=2; Caenorhabdi... 35 1.2
UniRef50_A7HW37 Cluster: Cytochrome c class I precursor; n=1; Pa... 35 1.6
UniRef50_A3A0A7 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_UPI00003C05CE Cluster: PREDICTED: similar to Cytochrome... 33 3.7
UniRef50_P00078 Cluster: Cytochrome c; n=18; Eukaryota|Rep: Cyto... 33 4.9
UniRef50_Q7WLB0 Cluster: Putative cytochrome c; n=4; Burkholderi... 33 6.5
UniRef50_Q1QHU4 Cluster: Cytochrome c, class I; n=4; Nitrobacter... 33 6.5
UniRef50_A7IIN0 Cluster: Cytochrome c class I; n=1; Xanthobacter... 33 6.5
UniRef50_A7HPP0 Cluster: Cytochrome c class I precursor; n=1; Pa... 33 6.5
UniRef50_A6UGH4 Cluster: Cytochrome c class I precursor; n=2; Si... 33 6.5
UniRef50_A0BRW9 Cluster: Chromosome undetermined scaffold_123, w... 32 8.6
UniRef50_Q6BLM3 Cluster: Postreplication repair E3 ubiquitin-pro... 32 8.6
UniRef50_P00079 Cluster: Cytochrome c; n=3; Oligohymenophorea|Re... 32 8.6
>UniRef50_P84029 Cluster: Cytochrome c-2; n=33; cellular
organisms|Rep: Cytochrome c-2 - Drosophila melanogaster
(Fruit fly)
Length = 108
Score = 46.4 bits (105), Expect = 5e-04
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSATK 518
M+FAGLKK NER DLIAYLKSATK
Sbjct: 85 MIFAGLKKPNERGDLIAYLKSATK 108
>UniRef50_Q6IQM2 Cluster: Cytochrome c; n=15; cellular
organisms|Rep: Cytochrome c - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 104
Score = 42.7 bits (96), Expect = 0.006
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSAT 521
M+FAG+KK ERADLIAYLKSAT
Sbjct: 81 MIFAGIKKKGERADLIAYLKSAT 103
>UniRef50_P62897 Cluster: Cytochrome c, somatic; n=125;
Eukaryota|Rep: Cytochrome c, somatic - Mus musculus
(Mouse)
Length = 105
Score = 41.1 bits (92), Expect = 0.019
Identities = 18/23 (78%), Positives = 20/23 (86%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSAT 521
M+FAG+KK ERADLIAYLK AT
Sbjct: 81 MIFAGIKKKGERADLIAYLKKAT 103
>UniRef50_P99999 Cluster: Cytochrome c; n=20; Eukaryota|Rep:
Cytochrome c - Homo sapiens (Human)
Length = 105
Score = 39.5 bits (88), Expect = 0.057
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSAT 521
M+F G+KK ERADLIAYLK AT
Sbjct: 81 MIFVGIKKKEERADLIAYLKKAT 103
>UniRef50_P00056 Cluster: Cytochrome c; n=25; Eukaryota|Rep:
Cytochrome c - Zea mays (Maize)
Length = 111
Score = 37.9 bits (84), Expect = 0.17
Identities = 18/23 (78%), Positives = 18/23 (78%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSAT 521
MVF GL K ERADLIAYLK AT
Sbjct: 88 MVFPGLXKPQERADLIAYLKEAT 110
>UniRef50_P19974 Cluster: Cytochrome c; n=22; Fungi/Metazoa
group|Rep: Cytochrome c - Caenorhabditis elegans
Length = 111
Score = 36.7 bits (81), Expect = 0.40
Identities = 16/20 (80%), Positives = 19/20 (95%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLK 530
MVFAGLKKA+ERADLI Y++
Sbjct: 85 MVFAGLKKADERADLIKYIE 104
>UniRef50_A7Q2F8 Cluster: Chromosome chr1 scaffold_46, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr1 scaffold_46, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 943
Score = 35.5 bits (78), Expect = 0.93
Identities = 17/23 (73%), Positives = 17/23 (73%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSAT 521
MVF G K ERADLIAYLK AT
Sbjct: 920 MVFPGQTKPQERADLIAYLKQAT 942
>UniRef50_Q8UJ37 Cluster: Cytochrome c homolog; n=3;
Rhizobiales|Rep: Cytochrome c homolog - Agrobacterium
tumefaciens (strain C58 / ATCC 33970)
Length = 192
Score = 35.1 bits (77), Expect = 1.2
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKS 527
M FAG+KK ERADLIAYL+S
Sbjct: 153 MGFAGVKKETERADLIAYLRS 173
>UniRef50_Q23240 Cluster: Probable cytochrome c; n=2;
Caenorhabditis|Rep: Probable cytochrome c -
Caenorhabditis elegans
Length = 123
Score = 35.1 bits (77), Expect = 1.2
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLK 530
MVFAGLKKA+ERADLI +++
Sbjct: 95 MVFAGLKKADERADLIKFIE 114
>UniRef50_A7HW37 Cluster: Cytochrome c class I precursor; n=1;
Parvibaculum lavamentivorans DS-1|Rep: Cytochrome c
class I precursor - Parvibaculum lavamentivorans DS-1
Length = 132
Score = 34.7 bits (76), Expect = 1.6
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSAT 521
M F GLKK +RA LIAYLKS T
Sbjct: 107 MAFPGLKKEEDRASLIAYLKSET 129
>UniRef50_A3A0A7 Cluster: Putative uncharacterized protein; n=1;
Oryza sativa (japonica cultivar-group)|Rep: Putative
uncharacterized protein - Oryza sativa subsp. japonica
(Rice)
Length = 146
Score = 34.7 bits (76), Expect = 1.6
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSAT 521
M F GLK+ +RADLIAYLK+AT
Sbjct: 123 MGFNGLKQPQDRADLIAYLKNAT 145
>UniRef50_UPI00003C05CE Cluster: PREDICTED: similar to Cytochrome c,
somatic; n=2; Coelomata|Rep: PREDICTED: similar to
Cytochrome c, somatic - Apis mellifera
Length = 103
Score = 33.5 bits (73), Expect = 3.7
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYL 533
MVF G+KKA+ER D+IAYL
Sbjct: 81 MVFTGIKKADERKDVIAYL 99
>UniRef50_P00078 Cluster: Cytochrome c; n=18; Eukaryota|Rep:
Cytochrome c - Crithidia fasciculata
Length = 114
Score = 33.1 bits (72), Expect = 4.9
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKS 527
M FAG+KK ERAD+IAYL++
Sbjct: 91 MSFAGMKKPQERADVIAYLET 111
>UniRef50_Q7WLB0 Cluster: Putative cytochrome c; n=4;
Burkholderiales|Rep: Putative cytochrome c - Bordetella
bronchiseptica (Alcaligenes bronchisepticus)
Length = 136
Score = 32.7 bits (71), Expect = 6.5
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSA 524
M +AG+ A ERADLIAYL++A
Sbjct: 102 MTYAGVPDAGERADLIAYLRAA 123
>UniRef50_Q1QHU4 Cluster: Cytochrome c, class I; n=4;
Nitrobacter|Rep: Cytochrome c, class I - Nitrobacter
hamburgensis (strain X14 / DSM 10229)
Length = 186
Score = 32.7 bits (71), Expect = 6.5
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKSATK 518
M FAGLK ++RADL+AYL + +K
Sbjct: 156 MSFAGLKSESKRADLVAYLATLSK 179
>UniRef50_A7IIN0 Cluster: Cytochrome c class I; n=1; Xanthobacter
autotrophicus Py2|Rep: Cytochrome c class I -
Xanthobacter sp. (strain Py2)
Length = 181
Score = 32.7 bits (71), Expect = 6.5
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKS 527
M FAG+ K ERADLIAYL S
Sbjct: 148 MAFAGIPKEAERADLIAYLNS 168
>UniRef50_A7HPP0 Cluster: Cytochrome c class I precursor; n=1;
Parvibaculum lavamentivorans DS-1|Rep: Cytochrome c
class I precursor - Parvibaculum lavamentivorans DS-1
Length = 220
Score = 32.7 bits (71), Expect = 6.5
Identities = 14/21 (66%), Positives = 16/21 (76%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKS 527
M FAG+KK ERADL+ YL S
Sbjct: 149 MSFAGIKKPQERADLLVYLNS 169
>UniRef50_A6UGH4 Cluster: Cytochrome c class I precursor; n=2;
Sinorhizobium|Rep: Cytochrome c class I precursor -
Sinorhizobium medicae WSM419
Length = 136
Score = 32.7 bits (71), Expect = 6.5
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYL 533
M FAGL+K ERAD+IAYL
Sbjct: 114 MTFAGLRKDQERADIIAYL 132
>UniRef50_A0BRW9 Cluster: Chromosome undetermined scaffold_123, whole
genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_123, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 1413
Score = 32.3 bits (70), Expect = 8.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 466 WNLLLI*PNQYDQLCIQQCYNCTIILKYLLVPNHNTII 353
+ LL + Y C++QC C +I+ L NHN II
Sbjct: 1090 YQLLEVIETPYFSQCLRQCLQCLLIISKLTKLNHNEII 1127
>UniRef50_Q6BLM3 Cluster: Postreplication repair E3
ubiquitin-protein ligase RAD18; n=1; Debaryomyces
hansenii|Rep: Postreplication repair E3
ubiquitin-protein ligase RAD18 - Debaryomyces hansenii
(Yeast) (Torulaspora hansenii)
Length = 491
Score = 32.3 bits (70), Expect = 8.6
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -1
Query: 445 PNQYDQLCIQQCYNCTIILKYLLVPNHNTIICSCCL*IHMYLVHNVLCDL 296
PN + +Q+CY C LK ++ + N CS C I YL+ N C L
Sbjct: 25 PNLKELDSLQRCYICKEFLKAPVITSCNHTFCSHC--IREYLIVNSHCPL 72
>UniRef50_P00079 Cluster: Cytochrome c; n=3; Oligohymenophorea|Rep:
Cytochrome c - Tetrahymena pyriformis
Length = 109
Score = 32.3 bits (70), Expect = 8.6
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -1
Query: 589 MVFAGLKKANERADLIAYLKS 527
M FAGL +RADLIAYLKS
Sbjct: 88 MAFAGLPADKDRADLIAYLKS 108
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,091,013
Number of Sequences: 1657284
Number of extensions: 7632276
Number of successful extensions: 17422
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17415
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -